Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ27_RS07970 Genome accession   NZ_CP064095
Coordinates   1586776..1587225 (+) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain N1303-2Ay     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1581776..1592225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS07950 hxlR 1582986..1583348 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  IRJ27_RS07955 hxlA 1583581..1584213 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  IRJ27_RS07960 hxlB 1584219..1584776 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  IRJ27_RS07965 tlpC 1584887..1586608 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  IRJ27_RS07970 nucA/comI 1586776..1587225 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  IRJ27_RS07975 nin/comJ 1587252..1587650 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  IRJ27_RS07980 bglC 1587687..1589120 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  IRJ27_RS07985 yckD 1589274..1589606 (-) 333 WP_003246247.1 YckD family protein -
  IRJ27_RS07990 yckC 1589688..1590143 (-) 456 WP_003246356.1 RDD family protein -
  IRJ27_RS07995 - 1590162..1590359 (-) 198 WP_119122841.1 hypothetical protein -
  IRJ27_RS08000 yckB 1590521..1591384 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  IRJ27_RS08005 yckA 1591394..1592074 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=499387 IRJ27_RS07970 WP_003246436.1 1586776..1587225(+) (nucA/comI) [Bacillus subtilis strain N1303-2Ay]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=499387 IRJ27_RS07970 WP_003246436.1 1586776..1587225(+) (nucA/comI) [Bacillus subtilis strain N1303-2Ay]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1