Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HK81_RS21470 Genome accession   NC_021848
Coordinates   2946775..2948298 (+) Length   507 a.a.
NCBI ID   WP_020904426.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2941775..2953298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS21455 (M636_21935) ilvE 2943418..2944356 (-) 939 WP_020904425.1 branched-chain-amino-acid transaminase -
  HK81_RS21460 (M636_21940) ilvM 2944369..2944653 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  HK81_RS21465 (M636_21945) ilvG 2944664..2946310 (-) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  HK81_RS21470 (M636_21950) comM 2946775..2948298 (+) 1524 WP_020904426.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HK81_RS21475 (M636_21955) - 2948355..2949311 (-) 957 WP_020904427.1 DUF2860 domain-containing protein -
  HK81_RS21480 (M636_21960) - 2949474..2950352 (+) 879 WP_020904428.1 acyltransferase -
  HK81_RS21485 (M636_21965) - 2950394..2950996 (-) 603 WP_020904429.1 thiol:disulfide interchange protein DsbA/DsbL -
  HK81_RS21490 (M636_21970) - 2951031..2952017 (-) 987 WP_020904430.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55002.07 Da        Isoelectric Point: 8.4861

>NTDB_id=49932 HK81_RS21470 WP_020904426.1 2946775..2948298(+) (comM) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=49932 HK81_RS21470 WP_020904426.1 2946775..2948298(+) (comM) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCTCCGGCGGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCTCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTCGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCGCAGGGTAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAGCTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTAGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGGCCTCATCTGGCTGAAGCTTTGGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae O1 biovar El Tor strain E7946

85.01

100

0.85
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Acinetobacter baylyi ADP1

49.499

98.422

0.487
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442