Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRJ17_RS04620 Genome accession   NZ_CP064090
Coordinates   910887..911366 (+) Length   159 a.a.
NCBI ID   WP_063231668.1    Uniprot ID   A0A4Y3PQM9
Organism   Brevibacillus parabrevis strain B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 905887..916366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS04595 pepF 905929..907839 (+) 1911 WP_122962397.1 oligoendopeptidase F -
  IRJ17_RS04600 - 907945..908313 (-) 369 WP_229049782.1 hypothetical protein -
  IRJ17_RS04605 - 908474..909097 (-) 624 WP_242773400.1 NAD(P)H-binding protein -
  IRJ17_RS04610 ychF 909329..910429 (+) 1101 WP_122962245.1 redox-regulated ATPase YchF -
  IRJ17_RS04615 rpsF 910570..910857 (+) 288 WP_047070274.1 30S ribosomal protein S6 -
  IRJ17_RS04620 ssbA 910887..911366 (+) 480 WP_063231668.1 single-stranded DNA-binding protein Machinery gene
  IRJ17_RS04625 rpsR 911408..911638 (+) 231 WP_005831740.1 30S ribosomal protein S18 -
  IRJ17_RS04630 - 911723..912631 (+) 909 WP_217021980.1 DUF2232 domain-containing protein -
  IRJ17_RS04635 - 912636..914573 (+) 1938 WP_063231664.1 DHH family phosphoesterase -
  IRJ17_RS04640 rplI 914600..915043 (+) 444 WP_122962248.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17178.06 Da        Isoelectric Point: 5.2753

>NTDB_id=499000 IRJ17_RS04620 WP_063231668.1 910887..911366(+) (ssbA) [Brevibacillus parabrevis strain B3]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAINRPRTNQAGEREADFINIVAWQKLADLCASYLRKGRQAAIEGRLQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGNEGGGDNAGYDPGPGFGGGNKPSGQRNNDFDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=499000 IRJ17_RS04620 WP_063231668.1 910887..911366(+) (ssbA) [Brevibacillus parabrevis strain B3]
ATGAATAAAGTTATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACCGTGGCTATCAATCGTCCTCGCACTAACCAGGCGGGTGAGAGAGAAGCCGATTTCATTAATATTGTCGCTTGGC
AAAAACTTGCCGATCTTTGTGCAAGCTACTTGCGCAAAGGAAGACAAGCTGCCATCGAAGGGCGCCTTCAGACGCGTTCC
TACGATAATAAAGAAGGAAAACGCGTATACGTAACGGAAGTCGTTGCTGAAAACGTTCAATTTTTGGGCGGACGAGGCAA
TGAAGGCGGCGGAGATAACGCAGGATACGATCCAGGACCGGGCTTTGGTGGCGGTAACAAGCCATCCGGTCAGAGAAACA
ATGACTTTGATCCGTTTGGTGATCCCTTCGCGAGTGCAGGCAAGCCGATCAACATCTCTGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3PQM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.597
  ssb Latilactobacillus sakei subsp. sakei 23K

43.678

100

0.478
  ssb Vibrio cholerae strain A1552

37.297

100

0.434
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.403
  ssb Neisseria meningitidis MC58

36

100

0.396
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.39