Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRT44_RS05145 Genome accession   NZ_CP064048
Coordinates   1096667..1097125 (-) Length   152 a.a.
NCBI ID   WP_171563919.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1091667..1102125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS05125 (IRT44_05075) rplI 1092929..1093372 (-) 444 WP_171563923.1 50S ribosomal protein L9 -
  IRT44_RS05130 (IRT44_05080) - 1093440..1095377 (-) 1938 WP_171563922.1 DHH family phosphoesterase -
  IRT44_RS05135 (IRT44_05085) - 1095382..1096290 (-) 909 WP_171563921.1 DUF2232 domain-containing protein -
  IRT44_RS05140 (IRT44_05090) rpsR 1096379..1096609 (-) 231 WP_171563920.1 30S ribosomal protein S18 -
  IRT44_RS05145 (IRT44_05095) ssbA 1096667..1097125 (-) 459 WP_171563919.1 single-stranded DNA-binding protein Machinery gene
  IRT44_RS05150 (IRT44_05100) rpsF 1097155..1097442 (-) 288 WP_171563918.1 30S ribosomal protein S6 -
  IRT44_RS05155 (IRT44_05105) ychF 1097582..1098682 (-) 1101 WP_171563917.1 redox-regulated ATPase YchF -
  IRT44_RS05160 (IRT44_05110) pepF 1099455..1101368 (-) 1914 WP_171563915.1 oligoendopeptidase F -
  IRT44_RS19455 (IRT44_05115) - 1101709..1101798 (+) 90 WP_171563914.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16520.46 Da        Isoelectric Point: 5.2753

>NTDB_id=498730 IRT44_RS05145 WP_171563919.1 1096667..1097125(-) (ssbA) [Brevibacillus sedimenti strain PCH 117]
MNKVILIGNLTKDPELRYTPNGVAVATFTLAVNRPRPNQAGEREADFINIVAWQKLADLCATYLRKGRQAAVEGRIQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGSEGAGYDPGFGGGKPTGGQRDDFDPFGDPFANAGKPINISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=498730 IRT44_RS05145 WP_171563919.1 1096667..1097125(-) (ssbA) [Brevibacillus sedimenti strain PCH 117]
ATGAATAAAGTCATTCTCATCGGAAACCTGACGAAAGATCCGGAGTTGCGCTATACGCCAAACGGTGTCGCTGTTGCCAC
CTTTACCCTCGCGGTGAACCGTCCGCGCCCCAATCAGGCGGGCGAGCGGGAAGCCGACTTCATTAACATTGTCGCCTGGC
AGAAACTGGCCGATTTGTGCGCCACGTATCTGCGCAAAGGCAGACAAGCGGCTGTCGAAGGGCGCATTCAGACGCGTTCC
TACGACAACAAGGAAGGCAAACGGGTGTACGTGACGGAAGTTGTGGCGGAAAACGTCCAGTTTTTGGGCGGGCGTGGCAG
TGAAGGCGCAGGTTACGATCCCGGCTTTGGCGGCGGGAAACCGACCGGCGGCCAACGTGACGACTTTGATCCATTTGGAG
ATCCCTTTGCCAATGCTGGCAAGCCGATCAACATTTCGGATGATGACTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.556

100

0.625
  ssb Latilactobacillus sakei subsp. sakei 23K

45.562

100

0.507
  ssb Neisseria gonorrhoeae MS11

36.994

100

0.421
  ssb Neisseria meningitidis MC58

36.416

100

0.414
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.545

72.368

0.395
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.382