Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SSUD12_RS04590 Genome accession   NC_017621
Coordinates   909083..909925 (+) Length   280 a.a.
NCBI ID   WP_014637904.1    Uniprot ID   G7SDX3
Organism   Streptococcus suis D12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 904083..914925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS04555 (SSUD12_0886) ylqF 904083..904934 (+) 852 WP_014637897.1 ribosome biogenesis GTPase YlqF -
  SSUD12_RS04560 (SSUD12_0887) - 904921..905694 (+) 774 WP_014637898.1 ribonuclease HII -
  SSUD12_RS04565 (SSUD12_0888) - 905697..906707 (+) 1011 WP_014637899.1 YdcF family protein -
  SSUD12_RS04570 (SSUD12_0889) trhA 906740..907390 (-) 651 WP_014637900.1 PAQR family membrane homeostasis protein TrhA -
  SSUD12_RS04575 (SSUD12_0890) - 907380..907931 (-) 552 WP_014637901.1 DUF1836 domain-containing protein -
  SSUD12_RS04580 (SSUD12_0891) - 908028..908339 (-) 312 WP_014637902.1 rhodanese-like domain-containing protein -
  SSUD12_RS04585 (SSUD12_0892) - 908467..909024 (+) 558 WP_014637903.1 sugar O-acetyltransferase -
  SSUD12_RS04590 (SSUD12_0893) dprA 909083..909925 (+) 843 WP_014637904.1 DNA-processing protein DprA Machinery gene
  SSUD12_RS04595 (SSUD12_0894) topA 910018..912111 (+) 2094 WP_004195696.1 type I DNA topoisomerase -
  SSUD12_RS04600 (SSUD12_0895) rplJ 912688..913182 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  SSUD12_RS04605 (SSUD12_0896) rplL 913248..913613 (+) 366 WP_014637905.1 50S ribosomal protein L7/L12 -
  SSUD12_RS04610 - 913762..914046 (+) 285 Protein_855 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31233.06 Da        Isoelectric Point: 8.2214

>NTDB_id=49791 SSUD12_RS04590 WP_014637904.1 909083..909925(+) (dprA) [Streptococcus suis D12]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEPGADPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=49791 SSUD12_RS04590 WP_014637904.1 909083..909925(+) (dprA) [Streptococcus suis D12]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCGGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAGAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTTGTTGGTACTCGAAATGCCAGCAAAAATGGCATTCAGTCTGTCCAGAAAATTATCAAGGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGATACAGCTGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATTGGAAAACACCATTT
AGTTTTGACTGAATATGAACCAGGTGCAGACCCTCTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGTGAGGCAAAAATGCGGTCTGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCCATACCTGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SDX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60

100

0.6
  dprA Legionella pneumophila strain ERS1305867

42.105

88.214

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

51.244

71.786

0.368

Multiple sequence alignment