Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SSUD12_RS03655 Genome accession   NC_017621
Coordinates   719842..720795 (+) Length   317 a.a.
NCBI ID   WP_014637765.1    Uniprot ID   G7SDU9
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714842..725795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS03640 (SSUD12_0701) - 715691..716728 (-) 1038 WP_014637762.1 3-deoxy-7-phosphoheptulonate synthase -
  SSUD12_RS03645 (SSUD12_0702) - 717029..717622 (-) 594 WP_014637763.1 DUF1361 domain-containing protein -
  SSUD12_RS03650 (SSUD12_0703) metG 717778..719781 (+) 2004 WP_014637764.1 methionine--tRNA ligase -
  SSUD12_RS03655 (SSUD12_0704) coiA 719842..720795 (+) 954 WP_014637765.1 competence protein CoiA Machinery gene
  SSUD12_RS03660 (SSUD12_0705) - 720839..721204 (+) 366 WP_014637766.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SSUD12_RS03665 (SSUD12_0706) HI0659 721194..721493 (+) 300 WP_014637767.1 helix-turn-helix domain-containing protein Machinery gene
  SSUD12_RS03670 (SSUD12_0707) pepF 721603..723405 (+) 1803 WP_014637768.1 oligoendopeptidase F Regulator
  SSUD12_RS03675 (SSUD12_0708) - 723407..723850 (+) 444 WP_014637769.1 hypothetical protein -
  SSUD12_RS03680 (SSUD12_0709) - 723861..724409 (+) 549 WP_014637770.1 DUF6630 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36671.26 Da        Isoelectric Point: 7.8565

>NTDB_id=49784 SSUD12_RS03655 WP_014637765.1 719842..720795(+) (coiA) [Streptococcus suis D12]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVSLRDCHYFSENESAQHLSLKSCLYSWLVNAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKDLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRCLIHEDLRGKVHCLTKIFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENVLTKTAEEWYPHIRLPRSAIGFAQIQKDLSPVYQDFDQYYAEVKDKRIQAVYPPAVYWKISRIKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=49784 SSUD12_RS03655 WP_014637765.1 719842..720795(+) (coiA) [Streptococcus suis D12]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCACGTTTCCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAGTCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAGGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGACCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTGCCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGATTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATGTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAAGTCCAGTCTATCAGGATTTTGACCAGTATTATGCGG
AGGTCAAGGACAAGCGGATACAAGCGGTTTATCCACCAGCAGTTTATTGGAAAATAAGTAGAATAAAAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SDU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.903

97.792

0.517
  coiA Streptococcus pneumoniae TIGR4

51.29

97.792

0.502
  coiA Streptococcus pneumoniae Rx1

51.29

97.792

0.502
  coiA Streptococcus pneumoniae D39

51.29

97.792

0.502
  coiA Streptococcus pneumoniae R6

51.29

97.792

0.502
  coiA Lactococcus lactis subsp. cremoris KW2

40.938

100

0.413

Multiple sequence alignment