Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SSUD12_RS03665 Genome accession   NC_017621
Coordinates   721194..721493 (+) Length   99 a.a.
NCBI ID   WP_014637767.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716194..726493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS03645 (SSUD12_0702) - 717029..717622 (-) 594 WP_014637763.1 DUF1361 domain-containing protein -
  SSUD12_RS03650 (SSUD12_0703) metG 717778..719781 (+) 2004 WP_014637764.1 methionine--tRNA ligase -
  SSUD12_RS03655 (SSUD12_0704) coiA 719842..720795 (+) 954 WP_014637765.1 competence protein CoiA Machinery gene
  SSUD12_RS03660 (SSUD12_0705) - 720839..721204 (+) 366 WP_014637766.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SSUD12_RS03665 (SSUD12_0706) HI0659 721194..721493 (+) 300 WP_014637767.1 helix-turn-helix domain-containing protein Machinery gene
  SSUD12_RS03670 (SSUD12_0707) pepF 721603..723405 (+) 1803 WP_014637768.1 oligoendopeptidase F Regulator
  SSUD12_RS03675 (SSUD12_0708) - 723407..723850 (+) 444 WP_014637769.1 hypothetical protein -
  SSUD12_RS03680 (SSUD12_0709) - 723861..724409 (+) 549 WP_014637770.1 DUF6630 family protein -
  SSUD12_RS11015 (SSUD12_0710) - 724559..725849 (-) 1291 Protein_671 IS4 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11058.73 Da        Isoelectric Point: 7.2059

>NTDB_id=49785 SSUD12_RS03665 WP_014637767.1 721194..721493(+) (HI0659) [Streptococcus suis D12]
MENSAIGSNWQSVRSELFSEKEIIESDLRVAIMSELIKARHEQGVSQKRLEELSGVSQPVIARMETGKTSPQLDTILKVL
ASLGKTLAVVPLKQERHFQ

Nucleotide


Download         Length: 300 bp        

>NTDB_id=49785 SSUD12_RS03665 WP_014637767.1 721194..721493(+) (HI0659) [Streptococcus suis D12]
ATGGAAAATAGTGCAATTGGTAGTAACTGGCAATCGGTACGGTCTGAACTCTTCAGTGAGAAGGAAATCATAGAAAGTGA
TTTGCGTGTGGCAATTATGAGCGAACTGATAAAAGCAAGGCATGAACAGGGAGTAAGTCAGAAAAGACTAGAGGAGCTAA
GCGGGGTGAGTCAACCAGTTATTGCAAGAATGGAAACAGGTAAAACTAGTCCACAATTGGACACTATCTTGAAGGTATTG
GCTAGTCTAGGCAAAACTTTAGCAGTTGTGCCTTTGAAACAGGAACGACATTTTCAATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.889

90.909

0.535

Multiple sequence alignment