Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SSUD9_RS05350 Genome accession   NC_017620
Coordinates   1092861..1093703 (-) Length   280 a.a.
NCBI ID   WP_009909860.1    Uniprot ID   A0A075SDJ3
Organism   Streptococcus suis D9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1087861..1098703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS05325 (SSUD9_1084) - 1087985..1088803 (-) 819 WP_014636959.1 replication initiator protein A -
  SSUD9_RS11485 (SSUD9_1085) - 1088800..1088973 (-) 174 WP_014636960.1 hypothetical protein -
  SSUD9_RS05335 (SSUD9_1087) rplL 1089173..1089538 (-) 366 WP_014636961.1 50S ribosomal protein L7/L12 -
  SSUD9_RS05340 (SSUD9_1088) rplJ 1089604..1090098 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  SSUD9_RS05345 (SSUD9_1089) topA 1090675..1092768 (-) 2094 WP_014636962.1 type I DNA topoisomerase -
  SSUD9_RS05350 (SSUD9_1090) dprA 1092861..1093703 (-) 843 WP_009909860.1 DNA-processing protein DprA Machinery gene
  SSUD9_RS05355 (SSUD9_1091) - 1093762..1094319 (-) 558 WP_009909862.1 sugar O-acetyltransferase -
  SSUD9_RS05360 (SSUD9_1092) - 1094330..1094590 (-) 261 WP_009909865.1 metal-sensitive transcriptional regulator -
  SSUD9_RS05365 (SSUD9_1093) - 1094709..1095033 (+) 325 Protein_1012 rhodanese-like domain-containing protein -
  SSUD9_RS05370 (SSUD9_1094) - 1095030..1096682 (+) 1653 WP_002936496.1 FAD-dependent oxidoreductase -
  SSUD9_RS05375 (SSUD9_1095) - 1096790..1097341 (+) 552 WP_002936497.1 DUF1836 domain-containing protein -
  SSUD9_RS05380 (SSUD9_1096) trhA 1097331..1097981 (+) 651 WP_002936498.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31260.13 Da        Isoelectric Point: 8.6529

>NTDB_id=49738 SSUD9_RS05350 WP_009909860.1 1092861..1093703(-) (dprA) [Streptococcus suis D9]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGVQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDKIYPKENRELQTYIGKHHLVLTEYGPGTDPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=49738 SSUD9_RS05350 WP_009909860.1 1092861..1093703(-) (dprA) [Streptococcus suis D9]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCGGGTTTGACCAATCTTAATGTGAACAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTTCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCTTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGCGTTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCTGCCCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCCGTTATTGGAACAGGTTTGGATAAGATATATCCCAAAGAAAATAGAGAATTACAGACCTACATCGGAAAACATCATTT
GGTTCTGACTGAATATGGACCAGGTACAGACCCTCTCAAGTACCATTTCCCAGAACGCAATCGCATAATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGTGAAGCTAAGATGCGGTCTGGTAGCCTCATTACCTGTGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCCGGCTTGGACATCATTTCAGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60.357

100

0.604
  dprA Bacillus subtilis subsp. subtilis str. 168

51.741

71.786

0.371
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368

Multiple sequence alignment