Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HGR01_RS36210 Genome accession   NZ_CP063785
Coordinates   8883292..8883657 (-) Length   121 a.a.
NCBI ID   WP_045867638.1    Uniprot ID   A0A0D6L0Y8
Organism   Tolypothrix sp. PCC 7712     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8878292..8888657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGR01_RS36200 (HGR01_35150) - 8879744..8882731 (-) 2988 WP_045867636.1 methyl-accepting chemotaxis protein -
  HGR01_RS36205 (HGR01_35155) - 8882748..8883278 (-) 531 WP_045867637.1 chemotaxis protein CheW -
  HGR01_RS36210 (HGR01_35160) pilH 8883292..8883657 (-) 366 WP_045867638.1 response regulator transcription factor Machinery gene
  HGR01_RS36215 (HGR01_35165) - 8883840..8885066 (-) 1227 WP_045867639.1 response regulator -
  HGR01_RS36220 - 8885326..8885505 (-) 180 WP_045867640.1 hypothetical protein -
  HGR01_RS36225 (HGR01_35170) hmpF 8885627..8887384 (+) 1758 WP_045867641.1 pilus motility taxis protein HmpF -
  HGR01_RS36230 (HGR01_35175) tilS 8887468..8888457 (-) 990 WP_045867642.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13326.41 Da        Isoelectric Point: 4.8604

>NTDB_id=496808 HGR01_RS36210 WP_045867638.1 8883292..8883657(-) (pilH) [Tolypothrix sp. PCC 7712]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=496808 HGR01_RS36210 WP_045867638.1 8883292..8883657(-) (pilH) [Tolypothrix sp. PCC 7712]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAAAGGGAGATGATTACAGACCTCCTGAAAGCAAGTGGCTTAAC
GGTCACCCATGCCAGTGATGGAGTTGAAGCTTTGGAGGCCATTCAAAGCACACCTCCGGATTTAGTGGTCTTGGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGCCGTCGGTTAAAATCCGATCCGAAAACCCAAAATGTCCCCGTTGTGATG
TGTTCTTCCAAAGGTGAAGAATTTGATCGCTACTGGGGTATGAAACAGGGTGCAGACGCTTATATAGCCAAACCGTTTCA
ACCAACTGAGTTGGTGGGAACAGTCAAACAATTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6L0Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364