Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IH404_RS25380 Genome accession   NZ_CP063780
Coordinates   5818468..5818983 (-) Length   171 a.a.
NCBI ID   WP_005791904.1    Uniprot ID   A0A7S7MTB4
Organism   Pseudomonas sp. OST1909     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5813468..5823983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS25355 (IH404_25355) - 5814800..5814943 (+) 144 WP_005791897.1 hypothetical protein -
  IH404_RS25360 (IH404_25360) - 5814970..5816289 (+) 1320 WP_194439370.1 aspartate aminotransferase family protein -
  IH404_RS25365 (IH404_25365) - 5816356..5816958 (+) 603 WP_005791900.1 formyltransferase family protein -
  IH404_RS25370 (IH404_25370) - 5817036..5817665 (+) 630 WP_005791901.1 LysE family translocator -
  IH404_RS25375 (IH404_25375) - 5817752..5818363 (+) 612 WP_032879215.1 LysE family translocator -
  IH404_RS25380 (IH404_25380) ssb 5818468..5818983 (-) 516 WP_005791904.1 single-stranded DNA-binding protein Machinery gene
  IH404_RS25385 (IH404_25385) - 5818993..5820387 (-) 1395 WP_194439372.1 MFS transporter -
  IH404_RS25390 (IH404_25390) uvrA 5820566..5823400 (+) 2835 WP_005791907.1 excinuclease ABC subunit UvrA -
  IH404_RS25395 (IH404_25395) bfr 5823467..5823931 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19060.23 Da        Isoelectric Point: 5.9455

>NTDB_id=496784 IH404_RS25380 WP_005791904.1 5818468..5818983(-) (ssb) [Pseudomonas sp. OST1909]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPTQQPQRESRPAPQQAAPQPAQ
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=496784 IH404_RS25380 WP_005791904.1 5818468..5818983(-) (ssb) [Pseudomonas sp. OST1909]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCTGAGATTGCCGGCGAATATCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGTCCACAGCCAACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAACAGGCTGCGCCGCAACCGGCTCAG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MTB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474