Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L897_RS00250 Genome accession   NC_021807
Coordinates   33792..34547 (+) Length   251 a.a.
NCBI ID   WP_020833180.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28792..39547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS09990 - 29807..30013 (-) 207 Protein_14 hypothetical protein -
  L897_RS09995 - 30167..30448 (-) 282 WP_109821002.1 transposase -
  L897_RS00240 (L897_00250) pcsB 31195..32391 (+) 1197 WP_020833179.1 peptidoglycan hydrolase PcsB -
  L897_RS00245 (L897_00255) - 32644..33606 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  L897_RS00250 (L897_00260) recO 33792..34547 (+) 756 WP_020833180.1 DNA repair protein RecO Machinery gene
  L897_RS00255 (L897_00265) plsX 34650..35657 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  L897_RS00260 (L897_00270) - 35650..35892 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  L897_RS00265 (L897_00275) purC 36043..36747 (+) 705 WP_017649245.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29529.97 Da        Isoelectric Point: 6.9077

>NTDB_id=49631 L897_RS00250 WP_020833180.1 33792..34547(+) (recO) [Streptococcus pyogenes HSC5]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRNDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=49631 L897_RS00250 WP_020833180.1 33792..34547(+) (recO) [Streptococcus pyogenes HSC5]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCAATGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment