Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SALIVA_RS07435 Genome accession   NC_017595
Coordinates   1666487..1668457 (-) Length   656 a.a.
NCBI ID   WP_013990224.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661487..1673457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07415 (SALIVA_1513) amiF 1661990..1662919 (-) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  SALIVA_RS07420 (SALIVA_1514) amiE 1662912..1663997 (-) 1086 WP_014634821.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS07425 (SALIVA_1515) amiD 1664007..1664933 (-) 927 WP_014634822.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVA_RS07430 (SALIVA_1516) amiC 1664933..1666426 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  SALIVA_RS07435 (SALIVA_1517) amiA 1666487..1668457 (-) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVA_RS07440 (SALIVA_1518) amiA 1668639..1670609 (-) 1971 WP_014634824.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVA_RS07445 (SALIVA_1519) pta 1670845..1671828 (-) 984 WP_014634825.1 phosphate acetyltransferase -
  SALIVA_RS07450 (SALIVA_1520) - 1671842..1672738 (-) 897 WP_014634826.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72935.32 Da        Isoelectric Point: 5.2837

>NTDB_id=49480 SALIVA_RS07435 WP_013990224.1 1666487..1668457(-) (amiA) [Streptococcus salivarius JIM8777]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=49480 SALIVA_RS07435 WP_013990224.1 1666487..1668457(-) (amiA) [Streptococcus salivarius JIM8777]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCATCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCTGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAT
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAGCCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.19

100

0.753
  amiA3 Streptococcus thermophilus LMD-9

75.19

100

0.753

Multiple sequence alignment