Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SALIVA_RS07440 Genome accession   NC_017595
Coordinates   1668639..1670609 (-) Length   656 a.a.
NCBI ID   WP_014634824.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663639..1675609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07425 (SALIVA_1515) amiD 1664007..1664933 (-) 927 WP_014634822.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVA_RS07430 (SALIVA_1516) amiC 1664933..1666426 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  SALIVA_RS07435 (SALIVA_1517) amiA 1666487..1668457 (-) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVA_RS07440 (SALIVA_1518) amiA 1668639..1670609 (-) 1971 WP_014634824.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVA_RS07445 (SALIVA_1519) pta 1670845..1671828 (-) 984 WP_014634825.1 phosphate acetyltransferase -
  SALIVA_RS07450 (SALIVA_1520) - 1671842..1672738 (-) 897 WP_014634826.1 RluA family pseudouridine synthase -
  SALIVA_RS07455 (SALIVA_1521) - 1672735..1673571 (-) 837 WP_002884507.1 NAD kinase -
  SALIVA_RS07460 (SALIVA_1522) - 1673543..1674217 (-) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  SALIVA_RS07465 (SALIVA_1523) - 1674313..1674888 (+) 576 WP_002886838.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71892.87 Da        Isoelectric Point: 5.0362

>NTDB_id=49481 SALIVA_RS07440 WP_014634824.1 1668639..1670609(-) (amiA) [Streptococcus salivarius JIM8777]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRKSYKFSAKKS
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=49481 SALIVA_RS07440 WP_014634824.1 1668639..1670609(-) (amiA) [Streptococcus salivarius JIM8777]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACTTTAGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAATGGTGTAGATGGTCTTATGGAAGCTGATAAATATGGGAACCTTGTTCCTTCTGTAGCT
GAAGATTGGTCAGTTTCTCAAGATGGTCTTACCTATACCTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAATTCTAAGACAACCTATGGTTTGCT
CTTCCCGGTTAACGAAGACTTTCTTAAGAATAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTTTATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAGGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTAAAAGCTATAAATTCTCAGCTAAGAAGTCA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTTAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTCGGTGACCTTGTGACAGAGAAAATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCAGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGCAGTGAAAATGTCGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCTACTCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCACTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.732

100

0.957
  amiA3 Streptococcus thermophilus LMG 18311

90.259

100

0.904
  amiA3 Streptococcus thermophilus LMD-9

90.107

100

0.902

Multiple sequence alignment