Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SALIVA_RS07425 Genome accession   NC_017595
Coordinates   1664007..1664933 (-) Length   308 a.a.
NCBI ID   WP_014634822.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659007..1669933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07395 (SALIVA_1509) - 1659087..1659881 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  SALIVA_RS07400 (SALIVA_1510) - 1660063..1660440 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  SALIVA_RS07405 (SALIVA_1511) - 1660445..1661143 (+) 699 WP_014634818.1 ABC transporter ATP-binding protein -
  SALIVA_RS07410 (SALIVA_1512) - 1661155..1661940 (+) 786 WP_041826692.1 hypothetical protein -
  SALIVA_RS07415 (SALIVA_1513) amiF 1661990..1662919 (-) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  SALIVA_RS07420 (SALIVA_1514) amiE 1662912..1663997 (-) 1086 WP_014634821.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS07425 (SALIVA_1515) amiD 1664007..1664933 (-) 927 WP_014634822.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVA_RS07430 (SALIVA_1516) amiC 1664933..1666426 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  SALIVA_RS07435 (SALIVA_1517) amiA 1666487..1668457 (-) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34623.77 Da        Isoelectric Point: 9.7054

>NTDB_id=49478 SALIVA_RS07425 WP_014634822.1 1664007..1664933(-) (amiD) [Streptococcus salivarius JIM8777]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=49478 SALIVA_RS07425 WP_014634822.1 1664007..1664933(-) (amiD) [Streptococcus salivarius JIM8777]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGTATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAATGTTGTCATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.052

100

0.981
  amiD Streptococcus thermophilus LMG 18311

97.078

100

0.971
  amiD Streptococcus thermophilus LMD-9

97.078

100

0.971

Multiple sequence alignment