Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   SALIVA_RS07420 Genome accession   NC_017595
Coordinates   1662912..1663997 (-) Length   361 a.a.
NCBI ID   WP_014634821.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1657912..1668997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS07390 (SALIVA_1508) - 1658276..1659094 (-) 819 WP_014634817.1 Cof-type HAD-IIB family hydrolase -
  SALIVA_RS07395 (SALIVA_1509) - 1659087..1659881 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  SALIVA_RS07400 (SALIVA_1510) - 1660063..1660440 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  SALIVA_RS07405 (SALIVA_1511) - 1660445..1661143 (+) 699 WP_014634818.1 ABC transporter ATP-binding protein -
  SALIVA_RS07410 (SALIVA_1512) - 1661155..1661940 (+) 786 WP_041826692.1 hypothetical protein -
  SALIVA_RS07415 (SALIVA_1513) amiF 1661990..1662919 (-) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  SALIVA_RS07420 (SALIVA_1514) amiE 1662912..1663997 (-) 1086 WP_014634821.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS07425 (SALIVA_1515) amiD 1664007..1664933 (-) 927 WP_014634822.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVA_RS07430 (SALIVA_1516) amiC 1664933..1666426 (-) 1494 WP_014634823.1 ABC transporter permease Regulator
  SALIVA_RS07435 (SALIVA_1517) amiA 1666487..1668457 (-) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 40009.67 Da        Isoelectric Point: 4.6135

>NTDB_id=49477 SALIVA_RS07420 WP_014634821.1 1662912..1663997(-) (amiE) [Streptococcus salivarius JIM8777]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLRSHQDWAAIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPEVIQNLHEKIRTNMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=49477 SALIVA_RS07420 WP_014634821.1 1662912..1663997(-) (amiE) [Streptococcus salivarius JIM8777]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACCAAGACCTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAGCTTAGGAGTCACCAAGATTGGGCAGCAATTCGTGGAGCTAAGATTGCAACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTTTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACGGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACTTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCTATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCCATGCAAATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGAGGTTATCCAAAATCTACATGAAAAAATCCGTACTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

98.892

100

0.989

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment