Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SSAL_RS02260 Genome accession   NC_017594
Coordinates   441397..442092 (+) Length   231 a.a.
NCBI ID   WP_014632740.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436397..447092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS02235 (Ssal_00488) - 436740..438326 (+) 1587 WP_004183188.1 DEAD/DEAH box helicase -
  SSAL_RS02240 (Ssal_00489) - 438382..438651 (-) 270 WP_013991038.1 GIY-YIG nuclease family protein -
  SSAL_RS02245 (Ssal_00490) - 438655..439419 (-) 765 WP_013991037.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SSAL_RS02250 (Ssal_00491) - 439469..440404 (-) 936 WP_045002039.1 polysaccharide deacetylase family protein -
  SSAL_RS02255 (Ssal_00492) - 440534..441289 (+) 756 WP_013991035.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SSAL_RS02260 (Ssal_00493) comEA 441397..442092 (+) 696 WP_014632740.1 helix-hairpin-helix domain-containing protein Machinery gene
  SSAL_RS02265 (Ssal_00495) comEC/celB 442082..444322 (+) 2241 WP_013991033.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SSAL_RS02270 (Ssal_00497) - 444408..445670 (+) 1263 WP_013991032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSAL_RS02275 (Ssal_00498) - 445736..446281 (+) 546 WP_013991031.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24416.28 Da        Isoelectric Point: 4.4966

>NTDB_id=49389 SSAL_RS02260 WP_014632740.1 441397..442092(+) (comEA) [Streptococcus salivarius 57.I]
MKEKILAYVKDNCLFVSVIAVLMVIFCFFLWMTYCAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKDE
SKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVVYVATKDENLSVLGQSGTGQVSDKG
GQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSIDDLKNVSGIGEKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=49389 SSAL_RS02260 WP_014632740.1 441397..442092(+) (comEA) [Streptococcus salivarius 57.I]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATTGTCTGTTTGTGAGTGTTATTGCTGTACTGATGGTGATTTTTTG
CTTCTTCCTATGGATGACTTACTGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCCTCCAAACAAAGCTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGATGAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGCTAATCCGGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGACTGA
TGCCATCAAAGCCGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAACTTAGCTGCAAGCTTGTCAGACGAAG
AGGTTGTCTATGTGGCAACTAAGGATGAAAACCTCTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTCTCTGATAAAGGA
GGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGGAGTTGCAAACCATTTCTGGGATTGG
AGCTAAGCGTGCTGAGGATATCATTGCCTATCGTGAAAGTCATGGTGGCTTTCAATCCATAGATGACTTGAAAAATGTCT
CAGGAATTGGTGAAAAAACTTTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

90.476

100

0.905
  comEA/celA/cilE Streptococcus mitis SK321

40.611

99.134

0.403
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.474

98.701

0.39
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385

Multiple sequence alignment