Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   INR79_RS12695 Genome accession   NZ_CP063199
Coordinates   2846148..2846468 (-) Length   106 a.a.
NCBI ID   WP_223094529.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2841148..2851468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS12670 (INR79_12670) - 2841569..2842783 (+) 1215 WP_022613111.1 pyridoxal phosphate-dependent aminotransferase -
  INR79_RS12675 (INR79_12675) yfbR 2842931..2843515 (+) 585 WP_004406194.1 5'-deoxynucleotidase -
  INR79_RS12680 (INR79_12680) - 2843564..2844883 (+) 1320 WP_223094525.1 anti-phage deoxyguanosine triphosphatase -
  INR79_RS12685 (INR79_12685) - 2844916..2845536 (-) 621 WP_223094527.1 tRNA-uridine aminocarboxypropyltransferase -
  INR79_RS12690 (INR79_12690) rrtA 2845525..2846091 (+) 567 WP_022598155.1 rhombosortase -
  INR79_RS12695 (INR79_12695) comEA 2846148..2846468 (-) 321 WP_223094529.1 ComEA family DNA-binding protein Machinery gene
  INR79_RS12700 (INR79_12700) ppiD 2846595..2848466 (-) 1872 WP_022590033.1 peptidylprolyl isomerase -
  INR79_RS12705 (INR79_12705) - 2848794..2849066 (-) 273 WP_004406206.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11194.90 Da        Isoelectric Point: 9.8209

>NTDB_id=493812 INR79_RS12695 WP_223094529.1 2846148..2846468(-) (comEA) [Vibrio sp. SCSIO 43132]
MKIIKLALIAALSLCSAVSANAWDSNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL

Nucleotide


Download         Length: 321 bp        

>NTDB_id=493812 INR79_RS12695 WP_223094529.1 2846148..2846468(-) (comEA) [Vibrio sp. SCSIO 43132]
ATGAAAATCATAAAACTGGCTTTGATAGCCGCTCTTTCTCTTTGCTCTGCCGTATCTGCAAACGCGTGGGATTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCCGGAATAGAAATTACCGTAAACATCAATACAGCGACCGCTGAGG
AGCTGCAAACGCTTTTAATCGGCATAGGTGCAAAGAAGGCGAAAACCATCGTAGAGTTTCGTGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGTAAAGTGAAGGGTATTGGCAACGCTACTGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

55.102

92.453

0.509
  comEA Vibrio cholerae strain A1552

55.102

92.453

0.509
  comEA Vibrio campbellii strain DS40M4

56.842

89.623

0.509
  comEA Vibrio parahaemolyticus RIMD 2210633

61.842

71.698

0.443
  comEA Acinetobacter baylyi ADP1

49.383

76.415

0.377
  comEA/comE1 Glaesserella parasuis strain SC1401

62.903

58.491

0.368