Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP90_RS03535 Genome accession   NZ_CP063124
Coordinates   722207..723736 (-) Length   509 a.a.
NCBI ID   WP_197542727.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 717207..728736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03505 (INP90_03505) - 717936..718448 (+) 513 WP_197559947.1 competence protein ComB -
  INP90_RS03510 (INP90_03510) - 718445..718987 (+) 543 WP_197542724.1 competence protein ComC -
  INP90_RS03515 (INP90_03515) - 718987..719370 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP90_RS03520 (INP90_03520) comE 719372..720754 (+) 1383 WP_197542725.1 type IV pilus secretin PilQ Machinery gene
  INP90_RS03525 (INP90_03525) - 720774..721463 (+) 690 WP_197542726.1 ComF family protein -
  INP90_RS03530 (INP90_03530) nfuA 721579..722163 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -
  INP90_RS03535 (INP90_03535) comM 722207..723736 (-) 1530 WP_197542727.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP90_RS03540 (INP90_03540) yihA 723866..724480 (-) 615 WP_197559948.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP90_RS03545 (INP90_03545) - 724594..725463 (+) 870 WP_070582963.1 VirK/YbjX family protein -
  INP90_RS03550 (INP90_03550) oppF 725503..726501 (-) 999 WP_105895958.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP90_RS03555 (INP90_03555) - 726498..727469 (-) 972 WP_070582965.1 ABC transporter ATP-binding protein -
  INP90_RS03560 (INP90_03560) oppC 727479..728414 (-) 936 WP_049373849.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55753.13 Da        Isoelectric Point: 9.6293

>NTDB_id=493204 INP90_RS03535 WP_197542727.1 722207..723736(-) (comM) [Haemophilus parainfluenzae strain M1C113_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLDRAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQSHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493204 INP90_RS03535 WP_197542727.1 722207..723736(-) (comM) [Haemophilus parainfluenzae strain M1C113_1]
ATGTCTCTTGCTATTGTTTACAGCCGTGCATCAATGGGTGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGCAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCACAAGATCGTGTCAGAAGTGCATTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGCATCACCGTCAACCTTGCACCGGCCGATTTACCCAAAGAAGGGGGTCGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCCGCATCAGATCAACTTGATGGCAGCCGTTTAAAACAGTTTGAATTCGT
TGGTGAACTTGCATTAACAGGTGAATTACGTGGTGTACACGGCGTGATTCCCGCCATTTTAGCAGCGCAAAAAGCAAAAC
GAGCCCCCATTATTGCTTATCAAAATGCTAATGAAGCTTCACTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAACCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACACGCCAAACGAGCTCTGACGATTGCAGCCGCAG
GCCAGCACAACCTACTCTTTTTAGGTCCTCCCGGTACAGGTAAAACCATGTTGGCAAGTCGTCTCACTGCATTGCTCCCT
GAAATGACAGATTTAGAAGCCATTGAAACCGCTTCAGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCGCCACATCATAGTGCCTCATTACCTGCCTTAGTAGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTACTAGATGCACTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCGAAAATCCAATTCCCCGCTCGCTTTCAACTCGTTGC
TGCGATGAATCCAAGTCCAACGGGTCATTATACTGGAACACATAACCGAACCTCACCACAACAAGTGATGCGTTATTTAA
ATCGCCTTTCGGGGCCGTTTTTAGATCGCTTTGATTTATCCATTGAAGTACCTCTTCTGCCACAAGGTAGCTTACAGAAT
ACAGGAGATAGAGGTGAGACAAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGGGAAATTCAACTTGATCGAGCCGG
TAAAATCAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTCCTTGAGA
ATGCACTCAATAAGCTTGGACTTTCAGTAAGAGCCTATCATCGGATTTTAAAAGTTTCACGCACAATTGCTGATTTAAAT
GGCGAAAAAGAAATACAACAATCTCATTTAGCCGAAGCGCTAGGATATCGGGCCATGGATCGATTATTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.308

99.607

0.919
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

66.732

99.804

0.666
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479