Detailed information NTG0493202

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP90_RS03520
• Genome accession: NZ_CP063124
• Coordinates: 719372..720754 (+)
• Length: 460 a.a.
• NCBI ID: WP_197542725.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C113_1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 714372..725754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP90_RS10370	-	714383..715075 (-)	693	Protein_676	penicillin-binding protein 1A	-
INP90_RS03495 (INP90_03495)	-	715151..717001 (-)	1851	Protein_677	penicillin-binding protein 1A	-
INP90_RS03500 (INP90_03500)	-	717101..717943 (+)	843	WP_197559946.1	competence protein ComA	-
INP90_RS03505 (INP90_03505)	-	717936..718448 (+)	513	WP_197559947.1	competence protein ComB	-
INP90_RS03510 (INP90_03510)	-	718445..718987 (+)	543	WP_197542724.1	competence protein ComC	-
INP90_RS03515 (INP90_03515)	-	718987..719370 (+)	384	WP_070582959.1	pilus assembly protein PilP	-
INP90_RS03520 (INP90_03520)	comE	719372..720754 (+)	1383	WP_197542725.1	type IV pilus secretin PilQ	Machinery gene
INP90_RS03525 (INP90_03525)	-	720774..721463 (+)	690	WP_197542726.1	ComF family protein	-
INP90_RS03530 (INP90_03530)	nfuA	721579..722163 (+)	585	WP_014064659.1	Fe-S biogenesis protein NfuA	-
INP90_RS03535 (INP90_03535)	comM	722207..723736 (-)	1530	WP_197542727.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP90_RS03540 (INP90_03540)	yihA	723866..724480 (-)	615	WP_197559948.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP90_RS03545 (INP90_03545)	-	724594..725463 (+)	870	WP_070582963.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51115.74 Da
• Isoelectric Point: 7.2239

>NTDB_id=493202 INP90_RS03520 WP_197542725.1 719372..720754(+) (comE) [Haemophilus parainfluenzae strain M1C113_1]
MIKQKIKTKCGQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENDIYYLGKLSQHEQYAEKMTEPMAISGESLSSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
HISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493202 INP90_RS03520 WP_197542725.1 719372..720754(+) (comE) [Haemophilus parainfluenzae strain M1C113_1]
ATGATAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACAACTTACTCAGCGGC
AGAGAATCGCGTATTTTCACTTCGCTTAAAACAAGCTCCCATGGTGGCGACACTCCAGCAACTTGCTCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGCTAGAAGGAACGCTTTCATTGCAATTAGATAACGTAGATTTTGATCGTTTATTGCGT
TCTGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATGATATTTATTATTTGGGTAAGCTTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCTATGGCAATTAGCGGAGAAAGTTTATCTAGTGAAACGCCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCTGATGTGATGAAATCTTTAACAACAGGGAGCGGTTCTTTGCTTTCACCTAGCGGC
ACAATTACATTTGATGATCGAAGCAATGTGTTACTGATTCAGGATGATGCTCGTTCTGTCAAAAATATCAAAAAATTGAT
TGCAGAGCTGGATAAACCCATTGAGCAAATCGTGATTGAAGCACGTATTGTGACGATTACAGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGTATTTTTAATCCGACTGAGGCTGCCCATCGAGTGAGTGGCAGTCTAGATGCGAATGGTTTTAGT
CATATCAGTAATAATTTAAACGTGAATTTTGCGACAACGGTCACGCCGGCTGGCTCATTGGCTCTTCAAGTCGCTAAAAT
TAATGGCCGATTATTAGACTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TTACGACCAACAAGAAAAGTGCAAGCATCAAACAAGGGACAGAAATTCCTTATGTGGTGACGAATGGGAAAAATGATACA
CAGTCAGTAGAGTTTCGCGAGGCTGTCTTAGGATTGGAAGTCACGCCGCATATTTCGAAGGATAATAATATCTTATTGGA
TTTATTAGTCAGTCAAAATTCTCCGGGAAATCGCGTGGCTTATGGGCAAAATGAAGTCGTATCCATTGATAAACAAGAAA
TTAATACGCAAGTGTTTGCCAAAGATGGGGAAACGATTGTATTGGGCGGCGTATTTCACGATACGATCACGAAAGGTGTC
GATAAAGTGCCATTATTGGGCGATATTCCAGGTATTAAGCGCTTATTCAGTAAGGAAAGTGAACGTCATCAAAAACGAGA
ACTCGTCATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (278-438)

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.497	97.609	0.717
comE	Haemophilus influenzae 86-028NP	72.606	97.609	0.709
comE	Glaesserella parasuis strain SC1401	53.664	91.957	0.493
pilQ	Vibrio campbellii strain DS40M4	41.57	94.13	0.391
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.176	92.391	0.38
pilQ	Vibrio cholerae strain A1552	41.176	92.391	0.38