Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   INP91_RS08725 Genome accession   NZ_CP063123
Coordinates   1810029..1811252 (+) Length   407 a.a.
NCBI ID   WP_197545829.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1805029..1816252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS08700 (INP91_08695) - 1805613..1806407 (-) 795 WP_197545827.1 sulfite exporter TauE/SafE family protein -
  INP91_RS08705 (INP91_08700) rppH 1806407..1807000 (-) 594 WP_070582539.1 RNA pyrophosphohydrolase -
  INP91_RS08710 (INP91_08705) ampD 1807485..1808048 (-) 564 WP_070582540.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP91_RS08715 (INP91_08710) pilA 1808191..1808634 (+) 444 WP_049379953.1 prepilin peptidase-dependent pilin Machinery gene
  INP91_RS08720 (INP91_08715) pilB 1808641..1810020 (+) 1380 WP_197545828.1 GspE/PulE family protein Machinery gene
  INP91_RS08725 (INP91_08720) pilC 1810029..1811252 (+) 1224 WP_197545829.1 type II secretion system F family protein Machinery gene
  INP91_RS08730 (INP91_08725) pilD 1811249..1811926 (+) 678 WP_197545830.1 prepilin peptidase Machinery gene
  INP91_RS08735 (INP91_08730) coaE 1812015..1812635 (+) 621 WP_197545831.1 dephospho-CoA kinase -
  INP91_RS08740 (INP91_08735) yacG 1812628..1812834 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  INP91_RS08745 (INP91_08740) - 1812831..1813112 (+) 282 WP_014064065.1 GNAT family N-acetyltransferase -
  INP91_RS08750 (INP91_08745) rhlB 1813203..1814462 (+) 1260 WP_197545832.1 ATP-dependent RNA helicase RhlB -
  INP91_RS08755 (INP91_08750) mreD 1814501..1814989 (-) 489 WP_197545833.1 rod shape-determining protein MreD -
  INP91_RS08760 (INP91_08755) mreC 1814989..1816053 (-) 1065 WP_197545834.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 46188.74 Da        Isoelectric Point: 9.7422

>NTDB_id=493182 INP91_RS08725 WP_197545829.1 1810029..1811252(+) (pilC) [Haemophilus parainfluenzae strain M1C120_2]
MAKQKLFYFQAYDQRQQWQKGSLVAQSKQAAQFQLIAKGFSHIRLQQDWQLNQKPKNAEISALLNQLATLLSSAIPLKNA
LHILQDNCTQLGLHQWLGALIELIESGISFSQSLEIQGKYLNFQEIQLIQVGEMTGKLAEVCTKIAERRTQSLALQRKLQ
KIMLYPAMVLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMSQFLQHHFIALMIVCIFALFMLKMALKHSLW
LNQKKNALISRMPIWGNIICLSRLISFSHNLQLMLQSGVALTPALNSFLPKQQTWQTQRTLKGDILLQQEVRSILQWVSQ
GYPFSESVSSHLFPMEAQQMLQIGEKSGKLALMLRHIADNYQEKLNHQIDLLSQLLEPLMMLIIGSLIGIIMMGMYLPIF
NMGSVIQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=493182 INP91_RS08725 WP_197545829.1 1810029..1811252(+) (pilC) [Haemophilus parainfluenzae strain M1C120_2]
ATGGCAAAGCAAAAACTCTTTTATTTTCAAGCCTATGATCAGCGACAACAATGGCAAAAAGGCAGTCTGGTTGCCCAATC
TAAACAAGCTGCACAATTCCAGTTAATCGCAAAAGGTTTTAGCCACATTCGCTTGCAACAAGATTGGCAACTTAATCAGA
AACCTAAAAATGCTGAGATCAGTGCTTTATTAAATCAGCTAGCTACACTACTCAGCTCTGCCATTCCATTAAAAAATGCA
TTGCACATTTTGCAAGATAACTGCACGCAATTGGGATTGCATCAGTGGCTTGGCGCCTTAATTGAATTAATTGAAAGTGG
CATTTCGTTTTCACAAAGCTTGGAAATACAAGGAAAGTATTTAAATTTTCAAGAAATTCAACTTATTCAAGTGGGAGAGA
TGACAGGAAAACTGGCGGAGGTATGCACTAAAATCGCAGAACGTCGAACGCAATCATTAGCGCTTCAACGCAAATTACAA
AAAATTATGCTTTATCCTGCCATGGTATTAGGTATTTCGCTTTCACTTACGTTAATTTTATTACTCTTCGTTGTACCGCA
ATTTGCTGAAATGTATGGCGAAAACTCCGCTGAACTGCCTACATTAACTGCTGTGTTATTAGCCATGTCTCAATTCCTAC
AACATCATTTTATCGCCTTGATGATTGTCTGCATTTTCGCTCTTTTTATGCTAAAGATGGCATTAAAACATTCTCTTTGG
CTGAATCAAAAAAAGAATGCGCTGATTAGTCGCATGCCAATTTGGGGCAATATCATTTGCCTTTCTCGCCTAATCAGTTT
TAGTCATAACTTACAATTAATGCTTCAATCCGGTGTAGCATTAACGCCTGCGCTAAATAGTTTTCTCCCCAAACAACAAA
CCTGGCAAACACAACGTACCTTAAAAGGCGATATTCTGCTACAACAAGAAGTGCGGTCAATTTTACAGTGGGTTTCTCAA
GGTTATCCATTTTCAGAAAGTGTCAGTAGTCATCTTTTCCCAATGGAAGCACAACAAATGCTACAGATTGGAGAGAAAAG
TGGAAAACTTGCGTTGATGTTGCGTCATATTGCTGATAACTATCAAGAAAAGCTCAATCATCAAATTGATTTACTTTCCC
AACTTTTAGAGCCATTAATGATGCTCATTATTGGTAGTTTAATTGGTATCATAATGATGGGCATGTATCTGCCGATTTTT
AATATGGGATCGGTAATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-398)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

70.05

99.263

0.695
  pilC Haemophilus influenzae 86-028NP

69.307

99.263

0.688
  pilC Glaesserella parasuis strain SC1401

39.9

98.526

0.393