Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INP91_RS08730 Genome accession   NZ_CP063123
Coordinates   1811249..1811926 (+) Length   225 a.a.
NCBI ID   WP_197545830.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806249..1816926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS08705 (INP91_08700) rppH 1806407..1807000 (-) 594 WP_070582539.1 RNA pyrophosphohydrolase -
  INP91_RS08710 (INP91_08705) ampD 1807485..1808048 (-) 564 WP_070582540.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP91_RS08715 (INP91_08710) pilA 1808191..1808634 (+) 444 WP_049379953.1 prepilin peptidase-dependent pilin Machinery gene
  INP91_RS08720 (INP91_08715) pilB 1808641..1810020 (+) 1380 WP_197545828.1 GspE/PulE family protein Machinery gene
  INP91_RS08725 (INP91_08720) pilC 1810029..1811252 (+) 1224 WP_197545829.1 type II secretion system F family protein Machinery gene
  INP91_RS08730 (INP91_08725) pilD 1811249..1811926 (+) 678 WP_197545830.1 prepilin peptidase Machinery gene
  INP91_RS08735 (INP91_08730) coaE 1812015..1812635 (+) 621 WP_197545831.1 dephospho-CoA kinase -
  INP91_RS08740 (INP91_08735) yacG 1812628..1812834 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  INP91_RS08745 (INP91_08740) - 1812831..1813112 (+) 282 WP_014064065.1 GNAT family N-acetyltransferase -
  INP91_RS08750 (INP91_08745) rhlB 1813203..1814462 (+) 1260 WP_197545832.1 ATP-dependent RNA helicase RhlB -
  INP91_RS08755 (INP91_08750) mreD 1814501..1814989 (-) 489 WP_197545833.1 rod shape-determining protein MreD -
  INP91_RS08760 (INP91_08755) mreC 1814989..1816053 (-) 1065 WP_197545834.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26150.09 Da        Isoelectric Point: 7.7000

>NTDB_id=493183 INP91_RS08730 WP_197545830.1 1811249..1811926(+) (pilD) [Haemophilus parainfluenzae strain M1C120_2]
MMTFAFFLLGGFAGIFTWLYIDRFIPNLQQEIYQNYIELYPENRPIFHSEKAAIQSQKCGHIFLYFLGFGLCFAVLYYFL
QNELFTLWLTITLSLLFVISWLDWHYQLISPTPCLFLFFLGLFGAHQKLSILTLSQSLESAVSFFGVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIAHLPLFLFIACLLGIIGYWISRKPVLPFAPFLCLSLIITSAINL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=493183 INP91_RS08730 WP_197545830.1 1811249..1811926(+) (pilD) [Haemophilus parainfluenzae strain M1C120_2]
ATGATGACATTCGCCTTTTTCTTATTGGGAGGTTTCGCTGGCATCTTTACTTGGCTTTATATCGATCGTTTTATCCCCAA
TCTCCAACAAGAAATTTATCAGAACTATATCGAACTTTATCCTGAAAACAGACCCATTTTCCATAGCGAAAAAGCAGCCA
TTCAATCTCAAAAGTGCGGTCATATTTTTCTTTATTTTTTAGGATTTGGACTCTGTTTTGCCGTACTCTATTACTTTCTA
CAAAATGAATTATTTACTTTATGGCTCACGATTACGCTTAGTCTACTCTTTGTTATCAGTTGGCTAGACTGGCACTATCA
ACTGATTTCACCTACACCTTGCCTGTTTTTATTTTTCCTGGGGCTATTCGGCGCACATCAAAAACTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGCTTGCTTTGGGAATCGGCACTTATCTCACCATCGCGCACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTAAACCTGTTTTACCTTTCGCGCCCTTTCTTT
GCTTATCATTAATCATCACCAGTGCAATCAACCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

52.941

98.222

0.52
  pilD Haemophilus influenzae 86-028NP

52.036

98.222

0.511