Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP91_RS02430 Genome accession   NZ_CP063123
Coordinates   500025..501554 (-) Length   509 a.a.
NCBI ID   WP_049375812.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 495025..506554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS02400 (INP91_02400) - 495753..496265 (+) 513 WP_049365758.1 hypothetical protein -
  INP91_RS02405 (INP91_02405) - 496337..496807 (+) 471 WP_232086149.1 YdbH domain-containing protein -
  INP91_RS02410 (INP91_02410) - 496804..497187 (+) 384 WP_049365760.1 pilus assembly protein PilP -
  INP91_RS02415 (INP91_02415) comE 497189..498571 (+) 1383 WP_197546138.1 type IV pilus secretin PilQ Machinery gene
  INP91_RS02420 (INP91_02420) - 498591..499280 (+) 690 WP_197546139.1 ComF family protein -
  INP91_RS02425 (INP91_02425) nfuA 499396..499980 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP91_RS02430 (INP91_02430) comM 500025..501554 (-) 1530 WP_049375812.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP91_RS02435 (INP91_02435) yihA 501683..502297 (-) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP91_RS02440 (INP91_02440) - 502411..503280 (+) 870 WP_197546140.1 VirK/YbjX family protein -
  INP91_RS02445 (INP91_02445) oppF 503320..504318 (-) 999 WP_005700062.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP91_RS02450 (INP91_02450) - 504315..505286 (-) 972 WP_070868468.1 ABC transporter ATP-binding protein -
  INP91_RS02455 (INP91_02455) oppC 505296..506231 (-) 936 WP_005700072.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55719.15 Da        Isoelectric Point: 9.7439

>NTDB_id=493167 INP91_RS02430 WP_049375812.1 500025..501554(-) (comM) [Haemophilus parainfluenzae strain M1C120_2]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493167 INP91_RS02430 WP_049375812.1 500025..501554(-) (comM) [Haemophilus parainfluenzae strain M1C120_2]
ATGTCTCTTGCCATTGTTTATAGCCGTGCATCAATGGGGGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCGCAAGATCGCGTTAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAATTAGATGGTAGTCGTTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACGGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCTATTTTAGCGGCACAAAAAGCCAAAC
GTGCCCCCATTATCGCTTATCAAAATGCCAATGAGGCATCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAATCTG
CTAGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCGTTGGCTTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTGGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCACTAACAATTGCGGCTGCAG
GTCAGCATAATCTGCTCTTTTTAGGACCTCCTGGTACAGGTAAAACCATGTTGGCAAGTCGTCTCACTGCATTGCTCCCT
GAAATGACCGATTTAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCATTCCGAGCACCACATCATAGTGCCTCATTACCAGCCTTAGTGGGCGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAACTACCTGAGTTTGAGCGAAAAGTACTGGATGCGCTTCGT
CAGCCCTTAGAAAGTGGAGAAATTATTATTTCTCGTGCCAATGCGAAAATCCAATTCCCTGCTCGCTTTCAATTAGTTGC
TGCGATGAACCCAAGTCCAACGGGGCATTATACCGGAACACATAATCGTACCTCACCGCAGCAAGTGATGCGTTATTTAA
ATCGCCTTTCAGGGCCATTTTTAGATCGCTTTGATTTGTCCATTGAAGTGCCTCTTCTGCCACAAGGTAGTTTACAAAAT
ACGGGAGATAGAGGCGAAACAAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGGGAAATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTTCTGGAGA
ATGCTTTAAATAAACTCGGGCTTTCTGTTAGAGCCTACCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTAAAT
GGTGAAAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCGATGGATCGGTTGTTACAAAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.505

99.607

0.921
  comM Glaesserella parasuis strain SC1401

79.882

99.607

0.796
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

66.012

100

0.66
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479