Detailed information NTG0493165

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP91_RS02415
• Genome accession: NZ_CP063123
• Coordinates: 497189..498571 (+)
• Length: 460 a.a.
• NCBI ID: WP_197546138.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C120_2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 492189..503571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP91_RS09800	-	492200..492892 (-)	693	Protein_459	penicillin-binding protein 1A	-
INP91_RS02390 (INP91_02390)	-	492968..494818 (-)	1851	Protein_460	penicillin-binding protein 1A	-
INP91_RS02395 (INP91_02395)	-	494918..495766 (+)	849	WP_197546137.1	pilus assembly protein PilM	-
INP91_RS02400 (INP91_02400)	-	495753..496265 (+)	513	WP_049365758.1	hypothetical protein	-
INP91_RS02405 (INP91_02405)	-	496337..496807 (+)	471	WP_232086149.1	YdbH domain-containing protein	-
INP91_RS02410 (INP91_02410)	-	496804..497187 (+)	384	WP_049365760.1	pilus assembly protein PilP	-
INP91_RS02415 (INP91_02415)	comE	497189..498571 (+)	1383	WP_197546138.1	type IV pilus secretin PilQ	Machinery gene
INP91_RS02420 (INP91_02420)	-	498591..499280 (+)	690	WP_197546139.1	ComF family protein	-
INP91_RS02425 (INP91_02425)	nfuA	499396..499980 (+)	585	WP_005694707.1	Fe-S biogenesis protein NfuA	-
INP91_RS02430 (INP91_02430)	comM	500025..501554 (-)	1530	WP_049375812.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP91_RS02435 (INP91_02435)	yihA	501683..502297 (-)	615	WP_032822378.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP91_RS02440 (INP91_02440)	-	502411..503280 (+)	870	WP_197546140.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51142.77 Da
• Isoelectric Point: 7.5107

>NTDB_id=493165 INP91_RS02415 WP_197546138.1 497189..498571(+) (comE) [Haemophilus parainfluenzae strain M1C120_2]
MIKQKIKTKCGQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENNIYYLGKPSQHEQYAEKMTEPMAINGESLPSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDEARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMDMTKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493165 INP91_RS02415 WP_197546138.1 497189..498571(+) (comE) [Haemophilus parainfluenzae strain M1C120_2]
ATGATAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTGTGGACAACTTACTCAGCAGC
AGAAAATCGCGTCTTTTCACTTCGCTTAAAACAGGCCCCCATGGTGGCGACACTCCAGCAACTTGCTCTTGAGCAAAATG
CTAATTTAATGATTGATGATGAGCTAGAAGGAACACTTTCATTGCAATTAGATAACGTAGATTTTGATCGCTTATTACGT
TCCGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATAATATTTATTATCTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCTATGGCGATTAACGGAGAAAGTTTGCCTAGCGAAACGCCACTTGTGAGTACAACGG
TTAAACTACATTTTGCCAAAGCCTCTGATGTGATGAAGTCCTTAACCACAGGTAGCGGTTCTTTGCTTTCACCTAGTGGC
ACCATTACCTTTGATGACCGAAGCAATGTATTACTGATTCAAGATGAGGCACGTTCTGTCAAAAATATCAAAAAATTAAT
CGCAGAGCTGGATAAACCCATTGAGCAAATCGTGATTGAAGCACGTATTGTGACGATTACCGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGTATTTTTAATCCTACTGAGGCAGCCCATCGAGTGAGTGGCAGCCTAGATGCGAATGGCTTTAGT
AATATCAGTAATAATTTAAATGTAAATTTTGCGACAACGGTCACGCCGGCCGGCTCATTAGCACTTCAAGTAGCCAAAAT
TAATGGTCGATTGTTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATCATAGCGAGCCCTCGCTTAC
TTACGACTAATAAGAAAAGCGCAAGCATTAAGCAAGGGACAGAAATTCCTTATGTAGTGACAAATGGTAAAAATGACACG
CAATCAGTGGAATTTCGCGAGGCAGTATTAGGATTGGAAGTTACACCGCATATTTCGAAAGATAATAATATCTTATTGGA
TTTATTAGTGAGTCAAAATTCTCCAGGGAATCGTGTGGCTTATGGGCAAAATGAAGTCGTATCCATTGATAAACAAGAAA
TTAATACGCAAGTGTTTGCTAAAGATGGCGAAACGATTGTATTGGGCGGCGTATTTCACGATACGATAACAAAAGGTGTC
GATAAAGTACCATTATTAGGTGATATCCCCGGTATTAAGCGTTTGTTTAGTAAGGAAAGTGAACGTCATCAAAAACGAGA
GCTCGTCATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGATATGACTAAAAAAGAAAAACATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.719	97.609	0.72
comE	Haemophilus influenzae 86-028NP	72.829	97.609	0.711
comE	Glaesserella parasuis strain SC1401	54.61	91.957	0.502
pilQ	Vibrio campbellii strain DS40M4	41.667	93.913	0.391
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.981	92.174	0.387
pilQ	Vibrio cholerae strain A1552	41.981	92.174	0.387