Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP92_RS03580 Genome accession   NZ_CP063122
Coordinates   729566..731095 (-) Length   509 a.a.
NCBI ID   WP_111387963.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 724566..736095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS03550 (INP92_03550) - 725292..725807 (+) 516 WP_232088003.1 PilN domain-containing protein -
  INP92_RS03555 (INP92_03555) - 725804..726346 (+) 543 WP_111387971.1 competence protein ComC -
  INP92_RS03560 (INP92_03560) - 726346..726729 (+) 384 WP_111387969.1 pilus assembly protein PilP -
  INP92_RS03565 (INP92_03565) comE 726731..728113 (+) 1383 WP_111387967.1 type IV pilus secretin PilQ Machinery gene
  INP92_RS03570 (INP92_03570) - 728133..728822 (+) 690 WP_111387965.1 ComF family protein -
  INP92_RS03575 (INP92_03575) nfuA 728938..729522 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP92_RS03580 (INP92_03580) comM 729566..731095 (-) 1530 WP_111387963.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP92_RS03585 (INP92_03585) yihA 731225..731839 (-) 615 WP_197554855.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP92_RS03590 (INP92_03590) - 731953..732822 (+) 870 WP_197554857.1 VirK/YbjX family protein -
  INP92_RS03595 (INP92_03595) oppF 732862..733860 (-) 999 WP_197554859.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP92_RS03600 (INP92_03600) - 733857..734828 (-) 972 WP_197554861.1 ABC transporter ATP-binding protein -
  INP92_RS03605 (INP92_03605) oppC 734838..735773 (-) 936 WP_197554863.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55777.23 Da        Isoelectric Point: 9.7439

>NTDB_id=493143 INP92_RS03580 WP_111387963.1 729566..731095(-) (comM) [Haemophilus parainfluenzae strain M1C125_4]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAIGFSTKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASITSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493143 INP92_RS03580 WP_111387963.1 729566..731095(-) (comM) [Haemophilus parainfluenzae strain M1C125_4]
ATGTCTCTTGCTATTGTTTACAGCCGAGCCTCAATGGGCGTACAAGCCCCTCTTGTTACTATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTAGGCCTCCCCGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAATTAGACGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAGCTCGCCTTGACGGGGGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCCAAAC
GTGCCCCCATTATCGCTTATCAAAATGCCAATGAAGCATCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAATCTG
CTAGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTAGCTTCATTACTTGCACAAGAAAGTGCGATCGGATT
TTCAACTAAAAATCACTTGGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCCCTAACAATAGCTGCTGCAG
GCCAACACAACCTACTCTTTTTAGGGCCACCGGGGACGGGTAAAACCATGTTGGCAAGTCGTCTCACAGCATTGCTCCCT
GAAATGACCGATTTAGAAGCGATTGAAACGGCTTCAATTACGAGCTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCATTCCGAGCACCACATCATAGTGCCTCATTACCAGCCTTAGTGGGTGGAGGAACCATTCCCAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTGCTTGATGCACTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCACGTGCCAATGCAAAAATACAGTTCCCCGCTCGCTTTCAACTCGTTGC
GGCAATGAATCCAAGTCCAACCGGACATTATACCGGAACACATAACCGCACCTCACCACAACAAGTAATGCGTTATTTAA
ATCGCCTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTCCCTCTTCTGCCACAAGGTAGCTTACAGAAT
ACGGGGGATAGAGGCGAAACCAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTCCTTGAGA
ATGCACTGAATAAGCTAGGACTTTCGGTGAGAGCCTATCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGAGCGATGGATCGGTTGTTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.11

99.607

0.917
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

67.323

99.804

0.672
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.381

99.018

0.519
  comM Legionella pneumophila strain ERS1305867

52.381

99.018

0.519
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.573

100

0.481