Detailed information NTG0493141

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP92_RS03565
• Genome accession: NZ_CP063122
• Coordinates: 726731..728113 (+)
• Length: 460 a.a.
• NCBI ID: WP_111387967.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C125_4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 721731..733113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP92_RS09410	-	721742..722434 (-)	693	Protein_685	penicillin-binding protein 1A	-
INP92_RS03540 (INP92_03540)	-	722510..724360 (-)	1851	Protein_686	penicillin-binding protein 1A	-
INP92_RS03545 (INP92_03545)	-	724460..725308 (+)	849	WP_111387975.1	competence protein ComA	-
INP92_RS03550 (INP92_03550)	-	725292..725807 (+)	516	WP_232088003.1	PilN domain-containing protein	-
INP92_RS03555 (INP92_03555)	-	725804..726346 (+)	543	WP_111387971.1	competence protein ComC	-
INP92_RS03560 (INP92_03560)	-	726346..726729 (+)	384	WP_111387969.1	pilus assembly protein PilP	-
INP92_RS03565 (INP92_03565)	comE	726731..728113 (+)	1383	WP_111387967.1	type IV pilus secretin PilQ	Machinery gene
INP92_RS03570 (INP92_03570)	-	728133..728822 (+)	690	WP_111387965.1	ComF family protein	-
INP92_RS03575 (INP92_03575)	nfuA	728938..729522 (+)	585	WP_005694707.1	Fe-S biogenesis protein NfuA	-
INP92_RS03580 (INP92_03580)	comM	729566..731095 (-)	1530	WP_111387963.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP92_RS03585 (INP92_03585)	yihA	731225..731839 (-)	615	WP_197554855.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP92_RS03590 (INP92_03590)	-	731953..732822 (+)	870	WP_197554857.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51131.75 Da
• Isoelectric Point: 7.9498

>NTDB_id=493141 INP92_RS03565 WP_111387967.1 726731..728113(+) (comE) [Haemophilus parainfluenzae strain M1C125_4]
MLNQKIKTKCGQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGKLSLQLDNVDFDRLLR
SVAKIKGFSFYQENNIYYLGKPSQHEQYAEKMTEPMAISGESLPSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKNNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493141 INP92_RS03565 WP_111387967.1 726731..728113(+) (comE) [Haemophilus parainfluenzae strain M1C125_4]
ATGCTAAACCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTGTGGACAACTTACTCAGCGGC
AGAAAATCGCGTCTTTTCACTTCGGTTAAAACAGGCGCCAATGGTAGCAACTCTCCAGCAACTTGCTCTTGAGCAAAATG
CTAATTTAATGATTGATGATGAGCTAGAAGGAAAACTTTCATTGCAATTAGATAACGTAGATTTTGATCGCTTATTACGT
TCCGTGGCAAAAATCAAAGGGTTCTCTTTTTATCAAGAAAATAATATTTATTATCTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCTATGGCGATTAGCGGAGAAAGTTTGCCTAGCGAAACACCACTGGTGAGTACAACGG
TTAAACTTCATTTTGCCAAGGCCTCTGATGTGATGAAATCGTTAACAACTGGTAGTGGTTCTTTGCTTTCACCTAGCGGC
ACGATTACCTTTGATGACCGAAGCAATGTATTACTGATTCAGGATGATGCACGTTCTGTCAAAAATATCAAAAAGTTAAT
CGCAGAGTTGGATAAACCCATTGAGCAAATCGTGATTGAAGCACGTATTGTGACGATTACTGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAGGCAGCCCATCGAGTGAGTGGCAGTTTAGATGCGAATGGATTTAGT
AATATCAGTAATAATTTAAATGTGAATTTTGCGACAACCGTCACGCCAGCTGGCTCATTAGCTCTTCAAGTAGCTAAAAT
TAATGGTCGATTATTAGACCTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TCACAACCAATAAGAAAAGCGCAAGCATTAAACAAGGGACAGAAATTCCTTATGTGGTGACGAATGGGAAAAATGACACC
CAATCAGTGGAATTTAGAGAGGCGGTGTTGGGATTAGAAGTGACACCGCATATTTCGAAGAATAATAATATTTTATTGGA
TTTATTAGTGAGTCAAAATTCCCCGGGAAATCGCGTGGCTTACGGGCAAAATGAAGTGGTGTCCATTGATAAACAAGAAA
TTAACACGCAAGTTTTTGCCAAAGATGGGGAAACAATTGTATTGGGTGGTGTATTCCACGATACGATCACGAAAGGTGTC
GATAAAGTACCATTATTGGGCGATATTCCTGGTATTAAGCGCTTATTTAGTAAGGAAAGTGAACGACATCAAAAGCGAGA
ACTCGTCATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAGATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.497	97.609	0.717
comE	Haemophilus influenzae 86-028NP	72.383	97.609	0.707
comE	Glaesserella parasuis strain SC1401	53.901	91.957	0.496
pilQ	Vibrio campbellii strain DS40M4	41.204	93.913	0.387
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.509	92.174	0.383
pilQ	Vibrio cholerae strain A1552	41.509	92.174	0.383