Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP93_RS03650 Genome accession   NZ_CP063121
Coordinates   739094..740623 (-) Length   509 a.a.
NCBI ID   WP_197545167.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 734094..745623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS03620 (INP93_03620) - 734824..735336 (+) 513 WP_197545164.1 PilN domain-containing protein -
  INP93_RS03625 (INP93_03625) - 735333..735875 (+) 543 WP_049369637.1 hypothetical protein -
  INP93_RS03630 (INP93_03630) - 735875..736258 (+) 384 WP_197545165.1 pilus assembly protein PilP -
  INP93_RS03635 (INP93_03635) comE 736260..737642 (+) 1383 WP_049369641.1 type IV pilus secretin PilQ Machinery gene
  INP93_RS03640 (INP93_03640) - 737662..738351 (+) 690 WP_049369643.1 ComF family protein -
  INP93_RS03645 (INP93_03645) nfuA 738466..739050 (+) 585 WP_197545166.1 Fe-S biogenesis protein NfuA -
  INP93_RS03650 (INP93_03650) comM 739094..740623 (-) 1530 WP_197545167.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP93_RS03655 (INP93_03655) yihA 740753..741367 (-) 615 WP_065243638.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP93_RS03660 (INP93_03660) - 741481..742350 (+) 870 WP_197545168.1 VirK/YbjX family protein -
  INP93_RS03665 (INP93_03665) oppF 742389..743387 (-) 999 WP_111327710.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP93_RS03670 (INP93_03670) - 743384..744355 (-) 972 WP_111327711.1 ABC transporter ATP-binding protein -
  INP93_RS03675 (INP93_03675) oppC 744365..745300 (-) 936 WP_111327712.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55753.17 Da        Isoelectric Point: 9.7439

>NTDB_id=493111 INP93_RS03650 WP_197545167.1 739094..740623(-) (comM) [Haemophilus parainfluenzae strain M1C130_2]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLFAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493111 INP93_RS03650 WP_197545167.1 739094..740623(-) (comM) [Haemophilus parainfluenzae strain M1C130_2]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGTGTACAAGCCCCTCTTGTTACCATTGAGGTACATTTAAGTAA
TGGGAAGCCTGGATTTACCTTAGTTGGTCTCCCCGAAAAAACCGTAAAAGAAGCGCAAGATCGGGTCAGAAGTGCATTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGCATCACCGTCAACCTTGCACCAGCCGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAACTCGACGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAACTCGCATTAACAGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCGAAAC
GAGCCCCCATTATCGCTTATCAAAATGCCAATGAGGCTTCGCTTGTTTCAGAACAAGAGACTTATTTTGCTAAAAACCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTATTCGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCACTAACAATAGCTGCCGCAG
GTCAGCATAATCTCCTCTTTTTAGGTCCACCCGGTACGGGTAAAACCATGTTGGCAAGTCGTCTCACGGCATTGCTCCCT
GAAATGACGGACTTAGAAGCGATTGAAACAGCTTCAGTTACGAGCTTAGTCCAAAATGAGTTAAATTTTCACAATTGGAA
ACAACGTCCATTTCGAGCGCCACATCATAGCGCCTCTTTGCCTGCCTTAGTTGGCGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAATTTGAGCGTAAAGTGCTTGATGCACTTCGC
CAACCATTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCTAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
GGCAATGAATCCTAGTCCAACGGGGCATTATACTGGAACACATAATCGTACCTCGCCACAACAAGTGATGCGTTATTTAA
ACCGCCTTTCAGGGCCGTTTTTAGATCGTTTTGATTTATCTATTGAAGTACCTCTTCTACCACAAGGTAGTTTACAAAAT
ACGGGAGATAGAGGCGAAACAAGCCAACAAGTACGAGAAAAAGTCTTAAAAGTAAGGGAAATCCAGCTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGGGACTGTAAATTACAGGATAAAGATGCGCTATTTCTAGAGA
ATGCTTTAAATAAACTCGGGCTTTCAGTGAGAGCCTACCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTAAAT
GGCGAAAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGAGCGATGGATCGGTTGTTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.505

99.607

0.921
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

67.323

99.804

0.672
  comM Vibrio campbellii strain DS40M4

65.945

99.804

0.658
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479