Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP94_RS03985 Genome accession   NZ_CP063120
Coordinates   804817..806346 (-) Length   509 a.a.
NCBI ID   WP_197544096.1    Uniprot ID   A0A7M1NYL4
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 799817..811346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS03955 (INP94_03955) - 800547..801059 (+) 513 WP_197544091.1 PilN domain-containing protein -
  INP94_RS03960 (INP94_03960) - 801056..801598 (+) 543 WP_197544092.1 competence protein ComC -
  INP94_RS03965 (INP94_03965) - 801598..801981 (+) 384 WP_197544093.1 pilus assembly protein PilP -
  INP94_RS03970 (INP94_03970) comE 801983..803365 (+) 1383 WP_197544094.1 type IV pilus secretin PilQ Machinery gene
  INP94_RS03975 (INP94_03975) - 803385..804074 (+) 690 WP_197544095.1 ComF family protein -
  INP94_RS03980 (INP94_03980) nfuA 804188..804772 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP94_RS03985 (INP94_03985) comM 804817..806346 (-) 1530 WP_197544096.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP94_RS03990 (INP94_03990) yihA 806475..807089 (-) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP94_RS03995 (INP94_03995) - 807203..808072 (+) 870 WP_197544097.1 VirK/YbjX family protein -
  INP94_RS04000 (INP94_04000) oppF 808112..809110 (-) 999 WP_197544098.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP94_RS04005 (INP94_04005) - 809107..810078 (-) 972 WP_197544099.1 ABC transporter ATP-binding protein -
  INP94_RS04010 (INP94_04010) oppC 810088..811023 (-) 936 WP_070868471.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55665.06 Da        Isoelectric Point: 9.6621

>NTDB_id=493080 INP94_RS03985 WP_197544096.1 804817..806346(-) (comM) [Haemophilus parainfluenzae strain M1C137_2]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSHLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAHLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493080 INP94_RS03985 WP_197544096.1 804817..806346(-) (comM) [Haemophilus parainfluenzae strain M1C137_2]
ATGTCTCTTGCCATTGTTTATAGCCGTGCATCAATGGGGGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCGCAAGATCGCGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATCGCGATAGGTATCTTGGCTGCATCAGATCAATTAGATGGTAGTCATTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACGGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCCAAAC
GTGCCCCCATTATCGCTTATCAAAATGCCAATGAGGCATCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAATCTG
CTAGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCTTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTGGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCACTAACAATTGCGGCTGCAG
GTCAGCATAATCTGCTCTTTTTAGGACCTCCTGGTACAGGTAAAACCATGTTGGCAAGTCGTCTCACTGCATTACTCCCA
GAAATGACTGATTTAGAAGCCATTGAAACCGCTTCGGTCACAAGCTTAGTACAAAATGAATTAAATTTTCAGAACTGGAA
ACAACGCCCATTTCGAGCGCCACATCATAGTGCATCTTTGCCTGCATTAGTGGGTGGAGGAACCATTCCAAAACCTGGCG
AAATATCGCTCGCACATAACGGTGTACTTTTTCTTGATGAGCTACCTGAGTTTGAGCGAAAAGTACTGGATGCACTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGTGCTAATGCGAAAATCCAATTTCCTGCTCGCTTTCAACTCGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACCGGAACACATAATCGTACCTCGCCACAACAAGTGATGCGTTATTTAA
ATCGCCTTTCAGGACCATTTTTAGATCGCTTTGATCTATCCATTGAAGTGCCTCTTCTGCCACAAGGTAGTTTACAAAAT
ACGGGAGATAGAGGCGAAACAAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGGGAGATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGCATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTTCTGGAGA
ATGCTTTAAATAAACTCGGGCTTTCTGTTAGAGCCTACCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTAAAT
GGTGAAAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCGATGGATCGGTTGTTACAAAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1NYL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.308

99.607

0.919
  comM Glaesserella parasuis strain SC1401

80.079

99.607

0.798
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479