Detailed information NTG0493078

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP94_RS03970
• Genome accession: NZ_CP063120
• Coordinates: 801983..803365 (+)
• Length: 460 a.a.
• NCBI ID: WP_197544094.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C137_2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 796983..808365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP94_RS10930	-	796994..797686 (-)	693	Protein_768	penicillin-binding protein 1A	-
INP94_RS03945 (INP94_03945)	-	797762..799612 (-)	1851	Protein_769	penicillin-binding protein 1A	-
INP94_RS03950 (INP94_03950)	-	799712..800560 (+)	849	WP_197544090.1	pilus assembly protein PilM	-
INP94_RS03955 (INP94_03955)	-	800547..801059 (+)	513	WP_197544091.1	PilN domain-containing protein	-
INP94_RS03960 (INP94_03960)	-	801056..801598 (+)	543	WP_197544092.1	competence protein ComC	-
INP94_RS03965 (INP94_03965)	-	801598..801981 (+)	384	WP_197544093.1	pilus assembly protein PilP	-
INP94_RS03970 (INP94_03970)	comE	801983..803365 (+)	1383	WP_197544094.1	type IV pilus secretin PilQ	Machinery gene
INP94_RS03975 (INP94_03975)	-	803385..804074 (+)	690	WP_197544095.1	ComF family protein	-
INP94_RS03980 (INP94_03980)	nfuA	804188..804772 (+)	585	WP_005694707.1	Fe-S biogenesis protein NfuA	-
INP94_RS03985 (INP94_03985)	comM	804817..806346 (-)	1530	WP_197544096.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP94_RS03990 (INP94_03990)	yihA	806475..807089 (-)	615	WP_032822378.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP94_RS03995 (INP94_03995)	-	807203..808072 (+)	870	WP_197544097.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51059.63 Da
• Isoelectric Point: 7.1773

>NTDB_id=493078 INP94_RS03970 WP_197544094.1 801983..803365(+) (comE) [Haemophilus parainfluenzae strain M1C137_2]
MVKQKIKTKCGQFLMCFLILWSTYSAAENRVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENDIYYLGKPSQHEQYAEKMAEPMAISGESLSSEIPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
NITFDDRSNVLLIQDDSRSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493078 INP94_RS03970 WP_197544094.1 801983..803365(+) (comE) [Haemophilus parainfluenzae strain M1C137_2]
ATGGTAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGTCAACTTACTCAGCGGC
AGAAAATCGTGTTTTTTCACTTCGCTTAAAACAGGCGCCCATGGTGGCGACACTCCAGCAACTTGCTCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGCTAGAAGGAACACTTTCATTGCAATTAGATAACGTGGACTTTGATCGTTTATTGCGT
TCTGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATGATATTTATTATTTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGGCAGAACCTATGGCAATTAGCGGAGAAAGTTTGTCTAGTGAAATACCTCTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCTGATGTGATGAAATCGTTAACAACAGGGAGCGGTTCTTTGCTTTCACCTAGTGGC
AACATTACCTTTGATGACCGAAGCAATGTATTACTGATTCAGGATGATTCACGTTCTGTCAAAAATATCAAAAAGTTAAT
CGCAGAGTTGGATAAACCCATTGAGCAAATCGTGATTGAAGCACGTATTGTGACGATTACTGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAAGCAGCACATCGAGTGAGTGGTAGTCTAGATGCAAATGGCTTTAGT
AATATCAGTAATAATTTAAACGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCACTTCAAGTGGCTAAAAT
TAATGGTCGATTATTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGTTTAC
TCACAACTAATAAGAAAAGCGCAAGCATTAAACAAGGGACAGAAATTCCTTATGTAGTGACAAATGGTAAAAATGATACA
CAGTCAGTAGAGTTTCGCGAGGCAGTCTTAGGATTGGAAGTCACACCACATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTCAGTCAAAATTCCCCGGGAAATCGCGTGGCTTACGGGCAAAATGAAGTTGTATCCATTGATAAACAAGAAA
TTAATACACAAGTTTTTGCCAAAGATGGCGAAACAATTGTATTGGGAGGGGTATTCCACGACACAATCACGAAAGGTGTC
GATAAAGTACCATTATTGGGCGATATTCCAGGTATTAAGCGTCTATTTAGTAAGGAAAGTGAACGACATCAAAAACGCGA
ACTCGTTATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.497	97.609	0.717
comE	Haemophilus influenzae 86-028NP	72.606	97.609	0.709
comE	Glaesserella parasuis strain SC1401	53.774	92.174	0.496
pilQ	Vibrio campbellii strain DS40M4	41.801	94.13	0.393
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.981	92.174	0.387
pilQ	Vibrio cholerae strain A1552	41.981	92.174	0.387