Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP95_RS03575 Genome accession   NZ_CP063117
Coordinates   739054..740583 (-) Length   509 a.a.
NCBI ID   WP_197560914.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 734054..745583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS03545 (INP95_03545) - 734787..735299 (+) 513 WP_070592528.1 PilN domain-containing protein -
  INP95_RS03550 (INP95_03550) - 735296..735838 (+) 543 WP_070592526.1 competence protein ComC -
  INP95_RS03555 (INP95_03555) - 735838..736221 (+) 384 WP_049385075.1 pilus assembly protein PilP -
  INP95_RS03560 (INP95_03560) comE 736223..737605 (+) 1383 WP_049385074.1 type IV pilus secretin PilQ Machinery gene
  INP95_RS03565 (INP95_03565) - 737625..738314 (+) 690 WP_070592520.1 ComF family protein -
  INP95_RS03570 (INP95_03570) nfuA 738430..739014 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP95_RS03575 (INP95_03575) comM 739054..740583 (-) 1530 WP_197560914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP95_RS03580 (INP95_03580) yihA 740713..741327 (-) 615 WP_049385069.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP95_RS03585 (INP95_03585) - 741440..742309 (+) 870 WP_197560915.1 VirK/YbjX family protein -
  INP95_RS03590 (INP95_03590) oppF 742349..743347 (-) 999 WP_005700062.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP95_RS03595 (INP95_03595) - 743344..744315 (-) 972 WP_049385065.1 ABC transporter ATP-binding protein -
  INP95_RS03600 (INP95_03600) oppC 744325..745260 (-) 936 WP_049385064.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55745.24 Da        Isoelectric Point: 9.7439

>NTDB_id=493047 INP95_RS03575 WP_197560914.1 739054..740583(-) (comM) [Haemophilus parainfluenzae strain M1C142_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIITYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
AGDRGETSQQVREKVLKVREIQLARAGKINAYLLSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493047 INP95_RS03575 WP_197560914.1 739054..740583(-) (comM) [Haemophilus parainfluenzae strain M1C142_1]
ATGTCTCTTGCCATTGTTTATAGCCGTGCATCAATGGGGGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGAGGGAGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCTGCATCAGATCAATTAGACGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAGCTCGCCTTGACGGGGGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCCAAAC
GTGCCCCCATTATCACTTATCAAAATGCCAATGAGGCGTCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAATCTG
CTAGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCTTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTGGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCTCTAACGATAGCGGCAGCTG
GTCAGCACAACCTACTCTTTTTAGGGCCACCTGGGACGGGTAAAACCATGTTGGCAAGTCGCCTCACGGCATTGCTCCCT
GAAATGACGGATTTAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCATTCCGAGCACCACATCATAGTGCCTCATTACCAGCCTTAGTGGGTGGAGGAACCATTCCCAAACCAGGCG
AAATATCGCTTGCACACAATGGTGTACTTTTCCTTGATGAACTACCTGAATTTGAGCGTAAAGTACTGGACGCTCTACGA
CAACCCTTAGAAAGTGGAGAAATTATTATTTCTCGTGCCAATGCGAAAATCCAATTCCCTGCTCGCTTTCAATTAGTTGC
GGCGATGAACCCAAGTCCAACGGGGCATTATACCGGAACACATAACCGCACCTCACCGCAGCAAGTGATGCGTTATTTAA
ATCGCCTTTCAGGGCCGTTTTTAGATCGTTTTGATTTATCTATTGAAGTCCCTCTTCTGCCACAAGGTAGCTTACAAAAT
GCGGGAGATAGAGGTGAGACAAGCCAACAAGTGCGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCCGG
TAAAATAAATGCGTATCTTTTAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTTCTGGAGA
ATGCTTTAAATAAACTCGGGCTTTCTGTTAGAGCCTACCATCGGATTTTAAAAGTCTCACGCACAATTGCCGATTTAAAT
GGCGAAAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGAGCGATGGATCGGTTGTTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.11

99.607

0.917
  comM Glaesserella parasuis strain SC1401

79.882

99.607

0.796
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

66.012

100

0.66
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479