Detailed information NTG0493045

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP95_RS03560
• Genome accession: NZ_CP063117
• Coordinates: 736223..737605 (+)
• Length: 460 a.a.
• NCBI ID: WP_049385074.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C142_1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 731223..742605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP95_RS09935	-	731240..731932 (-)	693	Protein_688	penicillin-binding protein 1A	-
INP95_RS03535 (INP95_03535)	-	732001..733852 (-)	1852	Protein_689	penicillin-binding protein 1A	-
INP95_RS03540 (INP95_03540)	-	733952..734800 (+)	849	WP_070776022.1	pilus assembly protein PilM	-
INP95_RS03545 (INP95_03545)	-	734787..735299 (+)	513	WP_070592528.1	PilN domain-containing protein	-
INP95_RS03550 (INP95_03550)	-	735296..735838 (+)	543	WP_070592526.1	competence protein ComC	-
INP95_RS03555 (INP95_03555)	-	735838..736221 (+)	384	WP_049385075.1	pilus assembly protein PilP	-
INP95_RS03560 (INP95_03560)	comE	736223..737605 (+)	1383	WP_049385074.1	type IV pilus secretin PilQ	Machinery gene
INP95_RS03565 (INP95_03565)	-	737625..738314 (+)	690	WP_070592520.1	ComF family protein	-
INP95_RS03570 (INP95_03570)	nfuA	738430..739014 (+)	585	WP_005694707.1	Fe-S biogenesis protein NfuA	-
INP95_RS03575 (INP95_03575)	comM	739054..740583 (-)	1530	WP_197560914.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP95_RS03580 (INP95_03580)	yihA	740713..741327 (-)	615	WP_049385069.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP95_RS03585 (INP95_03585)	-	741440..742309 (+)	870	WP_197560915.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51000.61 Da
• Isoelectric Point: 7.5107

>NTDB_id=493045 INP95_RS03560 WP_049385074.1 736223..737605(+) (comE) [Haemophilus parainfluenzae strain M1C142_1]
MIKQKIKTKCSQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQLAIEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENGIYYLGKPSQHEQYAEKMTEPMAISGESLPSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKAKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493045 INP95_RS03560 WP_049385074.1 736223..737605(+) (comE) [Haemophilus parainfluenzae strain M1C142_1]
ATGATAAAGCAGAAAATAAAAACAAAGTGCAGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACAACTTACTCTGCGGC
TGAAAATCGCGTATTTTCACTTCGCTTAAAACAGGCGCCAATGGTGGCGACACTCCAACAACTGGCTATTGAGCAAAACG
CTAATTTAATGATTGATGATGAGCTAGAAGGAACACTTTCATTACAATTAGATAACGTAGATTTTGATCGATTATTGCGT
TCTGTCGCAAAAATCAAAGGTCTCTCTTTTTATCAAGAAAATGGTATTTATTATTTGGGTAAACCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCGATGGCGATTAGCGGAGAAAGTTTGCCTAGTGAAACACCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCTGATGTGATGAAATCTTTAACAACTGGTAGTGGTTCTTTGCTTTCACCTAGCGGC
ACGATTACATTTGATGACCGAAGCAATGTATTACTGATTCAGGATGATGCACGTTCTGTCAAAAATATCAAAAAGTTAAT
CGCAGAGTTGGATAAACCCATTGAGCAAATCGTGATTGAGGCACGTATTGTGACGATTACTGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAGGCAGCCCATCGAGTGGGTGGCAGTTTAGATGCGAATGGGTTTAGC
AATATCAGTAATAATTTAAATGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCTCTTCAAGTAGCCAAAAT
TAATGGTCGATTGTTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TCACGACCAATAAGAAAAGCGCAAGCATCAAACAAGGGACAGAAATTCCTTATGTGGTGACAAATGGGAAAAATGACACT
CAATCAGTAGAATTTCGAGAAGCGGTGTTGGGATTAGAAGTGACACCGCATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTGAGTCAAAATTCCCCAGGAAATCGCGTGGCTTACGGGCAAAATGAAGTCGTATCCATTGATAAACAAGAAA
TCAATACACAAGTTTTTGCCAAAGATGGGGAAACAATTGTATTGGGTGGTGTATTCCACGATACCATCACGAAAGGTGTC
GATAAAGTGCCATTATTGGGCGATATTCCTGGTATTAAGCGCTTATTTAGTAAGGAAAGTGAACGTCATCAAAAACGAGA
GCTTGTGATTTTTGTGACACCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.719	97.609	0.72
comE	Haemophilus influenzae 86-028NP	72.829	97.609	0.711
comE	Glaesserella parasuis strain SC1401	54.61	91.957	0.502
pilQ	Vibrio campbellii strain DS40M4	42.593	93.913	0.4
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	42.453	92.174	0.391
pilQ	Vibrio cholerae strain A1552	42.453	92.174	0.391