Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP96_RS03530 Genome accession   NZ_CP063116
Coordinates   720490..722019 (-) Length   509 a.a.
NCBI ID   WP_197556220.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 715490..727019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS03500 (INP96_03500) - 716220..716732 (+) 513 WP_070582957.1 competence protein ComB -
  INP96_RS03505 (INP96_03505) - 716729..717271 (+) 543 WP_070582958.1 competence protein ComC -
  INP96_RS03510 (INP96_03510) - 717271..717654 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP96_RS03515 (INP96_03515) comE 717656..719038 (+) 1383 WP_197556217.1 type IV pilus secretin PilQ Machinery gene
  INP96_RS03520 (INP96_03520) - 719059..719748 (+) 690 WP_197556218.1 ComF family protein -
  INP96_RS03525 (INP96_03525) nfuA 719862..720446 (+) 585 WP_197556219.1 Fe-S biogenesis protein NfuA -
  INP96_RS03530 (INP96_03530) comM 720490..722019 (-) 1530 WP_197556220.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP96_RS03535 (INP96_03535) yihA 722149..722763 (-) 615 WP_197556221.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP96_RS03540 (INP96_03540) - 722877..723746 (+) 870 WP_197556222.1 VirK/YbjX family protein -
  INP96_RS03545 (INP96_03545) oppF 723786..724784 (-) 999 WP_070592507.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP96_RS03550 (INP96_03550) - 724781..725752 (-) 972 WP_197556223.1 ABC transporter ATP-binding protein -
  INP96_RS03555 (INP96_03555) oppC 725762..726697 (-) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55755.20 Da        Isoelectric Point: 9.7439

>NTDB_id=493016 INP96_RS03530 WP_197556220.1 720490..722019(-) (comM) [Haemophilus parainfluenzae strain M1C146_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGESSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQSHLAEALGYRAMDRLLQKLSAT

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=493016 INP96_RS03530 WP_197556220.1 720490..722019(-) (comM) [Haemophilus parainfluenzae strain M1C146_1]
ATGTCTCTTGCCATTGTTTATAGCCGTGCATCAATGGGGGTACAAGCTCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACAGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGTATCACCGTCAACCTTGCACCAGCCGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCAATCGGTATTTTAGCTGCATCAGATCAACTTGATGGCAGTCGTTTAAAACAGTTTGAATTCGT
TGGCGAGCTCGCATTAACGGGTGAATTACGTGGTGTACACGGCGTGATTCCCGCCATTTTAGCGGCACAAAAAGCGAAAC
GAGCCCCCATTATCGCTTATCAAAATGCCAATGAAGCTTCACTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAATCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTACTCGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCACTAATGATAGCTGCCGCAG
GCCAGCACAACCTGCTCTTTTTAGGGCCACCTGGGACAGGTAAAACCATGTTAGCAAGTCGTCTCACTGCATTGCTCCCT
GAAATGACCGATTTAGAAGCGATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCGCCACATCATAGTGCCTCATTACCTGCCTTAGTAGGAGGAGGAACCATTCCCAAACCAGGCG
AAATATCGCTCGCACATAATGGTGTACTTTTCCTTGATGAGCTACCTGAGTTTGAGCGTAAAGTGCTTGATGCACTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCGAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
AGCGATGAATCCAAGTCCAACAGGGCATTATACCGGAACACATAATCGCACCTCGCCTCAGCAAGTGATGCGTTATTTAA
ATCGCCTTTCTGGGCCGTTTTTAGATCGTTTTGATTTATCCATTGAAGTCCCTCTTCTACCGCAAGGTAGCCTACAAAAT
ACGGGGGATAGAGGCGAAAGCAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGGGAAATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTATCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCATTATTCCTTGAGA
ATGCACTGAATAAGCTAGGACTTTCAGTGAGAGCCTATCATCGGATTTTAAAAGTCTCACGTACAATTGCTGATTTAAAT
GGCGAAAAAGAGATACAACAATCTCATTTAGCAGAAGCACTAGGATATCGGGCGATGGATCGGTTGTTACAGAAATTGTC
TGCTACTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.913

99.607

0.916
  comM Glaesserella parasuis strain SC1401

79.487

99.607

0.792
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

66.012

100

0.66
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.573

100

0.481