Detailed information NTG0493014

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP96_RS03515
• Genome accession: NZ_CP063116
• Coordinates: 717656..719038 (+)
• Length: 460 a.a.
• NCBI ID: WP_197556217.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C146_1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 712656..724038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP96_RS09430	-	712667..713359 (-)	693	Protein_677	penicillin-binding protein 1A	-
INP96_RS03490 (INP96_03490)	-	713435..715285 (-)	1851	Protein_678	penicillin-binding protein 1A	-
INP96_RS03495 (INP96_03495)	-	715385..716227 (+)	843	WP_070582956.1	competence protein ComA	-
INP96_RS03500 (INP96_03500)	-	716220..716732 (+)	513	WP_070582957.1	competence protein ComB	-
INP96_RS03505 (INP96_03505)	-	716729..717271 (+)	543	WP_070582958.1	competence protein ComC	-
INP96_RS03510 (INP96_03510)	-	717271..717654 (+)	384	WP_070582959.1	pilus assembly protein PilP	-
INP96_RS03515 (INP96_03515)	comE	717656..719038 (+)	1383	WP_197556217.1	type IV pilus secretin PilQ	Machinery gene
INP96_RS03520 (INP96_03520)	-	719059..719748 (+)	690	WP_197556218.1	ComF family protein	-
INP96_RS03525 (INP96_03525)	nfuA	719862..720446 (+)	585	WP_197556219.1	Fe-S biogenesis protein NfuA	-
INP96_RS03530 (INP96_03530)	comM	720490..722019 (-)	1530	WP_197556220.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP96_RS03535 (INP96_03535)	yihA	722149..722763 (-)	615	WP_197556221.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP96_RS03540 (INP96_03540)	-	722877..723746 (+)	870	WP_197556222.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51092.66 Da
• Isoelectric Point: 7.1773

>NTDB_id=493014 INP96_RS03515 WP_197556217.1 717656..719038(+) (comE) [Haemophilus parainfluenzae strain M1C146_1]
MIKQKIKTKCGQFLMCFLILWTTYSAAENRVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENDIYYLGKPSQHEQYAEKMTEPMAISGESLSSETPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTETAHRVSGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQIEKAKK

Nucleotide

• Length: 1383 bp

>NTDB_id=493014 INP96_RS03515 WP_197556217.1 717656..719038(+) (comE) [Haemophilus parainfluenzae strain M1C146_1]
ATGATAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACAACTTACTCAGCGGC
AGAGAATCGCGTATTTTCACTTCGCTTAAAACAAGCTCCCATGGTGGCGACACTCCAGCAACTTGCTCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGCTAGAAGGAACGCTTTCATTGCAATTAGATAACGTAGATTTTGATCGTTTATTGCGT
TCTGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATGATATTTATTATTTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCTATGGCAATTAGCGGAGAAAGTTTATCTAGTGAAACGCCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCTGATGTGATGAAATCTTTAACAACAGGGAGCGGTTCTTTGCTTTCACCTAGCGGC
ACAATTACATTTGATGATCGAAGCAATGTGTTACTGATTCAGGATGATGCTCGTTCTGTCAAAAATATCAAAAAATTAAT
TGCAGAGCTGGATAAACCCATTGAACAAATTGTCATTGAAGCACGTATTGTGACGATTACCGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCCACTGAAACTGCCCATCGAGTGAGTGGTAGTCTAGATGCTAATGGCTTTAGT
AATATCAGTAATAATTTAAACGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCGCTTCAAGTCGCTAAAAT
TAATGGTCGATTATTAGACTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TCACGACTAATAAGAAAAGCGCAAGCATTAAACAAGGGACAGAAATTCCTTATGTGGTGACGAATGGTAAAAATGATACG
CAATCAGTAGAGTTTCGCGAGGCTGTCTTAGGATTGGAAGTCACTCCGCATATTTCTAAGGATAATAATATCTTATTGGA
TTTATTAGTCAGTCAAAATTCCCCGGGTAATCGCGTGGCTTACGGACAAAATGAAGTGGTATCCATTGATAAACAAGAAA
TTAATACGCAAGTTTTTGCCAAAGATGGCGAAACAATTGTATTGGGTGGTGTATTCCACGATACGATCACGAAAGGTGTC
GATAAAGTACCATTATTGGGCGATATTCCAGGTATTAAACGCTTATTTAGTAAGGAAAGCGAACGTCATCAAAAGCGAGA
GCTTGTAATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAATTGAAAAAGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.719	97.609	0.72
comE	Haemophilus influenzae 86-028NP	72.829	97.609	0.711
comE	Glaesserella parasuis strain SC1401	53.664	91.957	0.493
pilQ	Vibrio campbellii strain DS40M4	41.57	94.13	0.391
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.745	92.174	0.385
pilQ	Vibrio cholerae strain A1552	41.745	92.174	0.385