Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP97_RS03495 Genome accession   NZ_CP063113
Coordinates   708429..709958 (-) Length   509 a.a.
NCBI ID   WP_197563234.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 703429..714958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS03465 (INP97_03460) - 704159..704671 (+) 513 WP_197563225.1 competence protein ComB -
  INP97_RS03470 (INP97_03465) - 704668..705210 (+) 543 WP_197563227.1 competence protein ComC -
  INP97_RS03475 (INP97_03470) - 705210..705593 (+) 384 WP_197563228.1 pilus assembly protein PilP -
  INP97_RS03480 (INP97_03475) comE 705595..706977 (+) 1383 WP_197563230.1 type IV pilus secretin PilQ Machinery gene
  INP97_RS03485 (INP97_03480) - 706997..707686 (+) 690 WP_197563232.1 ComF family protein -
  INP97_RS03490 (INP97_03485) nfuA 707801..708385 (+) 585 WP_049365763.1 Fe-S biogenesis protein NfuA -
  INP97_RS03495 (INP97_03490) comM 708429..709958 (-) 1530 WP_197563234.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP97_RS03500 (INP97_03495) yihA 710088..710702 (-) 615 WP_197563236.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INP97_RS03505 (INP97_03500) - 710816..711685 (+) 870 WP_197563238.1 VirK/YbjX family protein -
  INP97_RS03510 (INP97_03505) oppF 711725..712723 (-) 999 WP_197563240.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INP97_RS03515 (INP97_03510) - 712720..713691 (-) 972 WP_070776027.1 ABC transporter ATP-binding protein -
  INP97_RS03520 (INP97_03515) oppC 713701..714636 (-) 936 WP_005700072.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55672.14 Da        Isoelectric Point: 9.7439

>NTDB_id=492984 INP97_RS03495 WP_197563234.1 708429..709958(-) (comM) [Haemophilus parainfluenzae strain M1C147_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVPEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSATNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
AGDRGETSQQVRDKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLEKALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=492984 INP97_RS03495 WP_197563234.1 708429..709958(-) (comM) [Haemophilus parainfluenzae strain M1C147_1]
ATGTCTCTTGCTATTGTTTACAGCCGTGCATCAATGGGTGTACAAGCCCCTCTTGTTACGATTGAAGTACATTTAAGTAA
CGGGAAGCCTGGATTTACCTTAGTTGGTCTACCTGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGAGGGAGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCAGCATCGGATCAACTCGACGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAGCTCGCCTTGACGGGGGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCGGCACAAAAAGCCAAAC
GCGCCCCCATTATCGCTTATCAAAATGCCAATGAGGCATCGCTTGTCCCAGAGCAAGAGACTTATTTCGCTAAAAATCTG
CTAGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCTTCATTACTTGCACAAGAAAGTGCGGTCGGATT
TTCAGCTACAAATCACTTGGATTTGACCGATATTATTGGTCAGCAACATGCTAAACGAGCACTAACAATTGCGGCTGCAG
GTCAGCACAACCTACTCTTTTTAGGACCACCTGGGACGGGTAAAACCATGTTGGCTAGCCGTCTCACTGCATTGCTCCCT
GAAATGACGGATTTAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCGCCACATCATAGTGCTTCTTTGCCGGCCTTAGTTGGCGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCCCATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGAAAAGTACTGGATGCGCTTCGT
CAGCCCTTAGAAAGTGGAGAAATTATTATTTCTCGTGCCAATGCGAAAATCCAATTCCCTGCTCGCTTTCAATTAGTTGC
TGCGATGAACCCAAGTCCAACGGGGCATTATACCGGAACACATAACCGCACCTCGCCGCAGCAAGTGATGCGTTATTTAA
ATCGCCTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTCCCTCTTCTGCCACAAGGTAGCTTACAAAAT
GCGGGAGATAGAGGTGAGACAAGCCAACAAGTACGAGATAAAGTGTTAAAAGTGAGAGAGATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGGGATTGTAAATTACAAGATAAAGATGCCCTGTTTCTTGAAA
AGGCGCTGAATAAGCTAGGACTTTCAGTGAGAGCCTATCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGAGCCATGGATAGATTGTTACAGAAATTATC
TGCTGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.913

99.607

0.916
  comM Glaesserella parasuis strain SC1401

79.487

99.607

0.792
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

65.354

99.804

0.652
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.07

100

0.473