Detailed information NTG0492982

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: INP97_RS03480
• Genome accession: NZ_CP063113
• Coordinates: 705595..706977 (+)
• Length: 460 a.a.
• NCBI ID: WP_197563230.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C147_1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 700595..711977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP97_RS09705	-	700606..701298 (-)	693	Protein_668	penicillin-binding protein 1A	-
INP97_RS03455 (INP97_03450)	-	701374..703224 (-)	1851	Protein_669	penicillin-binding protein 1A	-
INP97_RS03460 (INP97_03455)	-	703324..704172 (+)	849	WP_197563223.1	competence protein ComA	-
INP97_RS03465 (INP97_03460)	-	704159..704671 (+)	513	WP_197563225.1	competence protein ComB	-
INP97_RS03470 (INP97_03465)	-	704668..705210 (+)	543	WP_197563227.1	competence protein ComC	-
INP97_RS03475 (INP97_03470)	-	705210..705593 (+)	384	WP_197563228.1	pilus assembly protein PilP	-
INP97_RS03480 (INP97_03475)	comE	705595..706977 (+)	1383	WP_197563230.1	type IV pilus secretin PilQ	Machinery gene
INP97_RS03485 (INP97_03480)	-	706997..707686 (+)	690	WP_197563232.1	ComF family protein	-
INP97_RS03490 (INP97_03485)	nfuA	707801..708385 (+)	585	WP_049365763.1	Fe-S biogenesis protein NfuA	-
INP97_RS03495 (INP97_03490)	comM	708429..709958 (-)	1530	WP_197563234.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
INP97_RS03500 (INP97_03495)	yihA	710088..710702 (-)	615	WP_197563236.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
INP97_RS03505 (INP97_03500)	-	710816..711685 (+)	870	WP_197563238.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51032.65 Da
• Isoelectric Point: 7.5721

>NTDB_id=492982 INP97_RS03480 WP_197563230.1 705595..706977(+) (comE) [Haemophilus parainfluenzae strain M1C147_1]
MIKQKIKTKCGQFLMCFLILWTSYSSAENHVFSLRLKQAPMVATLQQLALEQNANLMIDDELEGTLSLQLDNVDFDRLLR
SVAKIKGLSFYQENNIYYLGKPSQHEQYAEKMTEPMAISGESLPSEIPLVSTTVKLHFAKASDVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
NISNNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGV
DKVPLLGDIPGIKHLFSKKSERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKAKK

Nucleotide

• Length: 1383 bp

>NTDB_id=492982 INP97_RS03480 WP_197563230.1 705595..706977(+) (comE) [Haemophilus parainfluenzae strain M1C147_1]
ATGATAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACTAGCTATTCATCGGC
AGAGAATCACGTATTTTCACTTCGCTTAAAACAGGCACCAATGGTGGCGACACTCCAACAGCTTGCCCTTGAGCAAAATG
CCAATTTAATGATTGATGATGAGCTAGAAGGAACGCTTTCATTGCAATTAGATAACGTGGATTTTGATCGTTTATTGCGT
TCTGTGGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAATAATATTTATTATCTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGACAGAACCGATGGCAATTAGCGGAGAAAGTTTGCCTAGTGAAATACCACTTGTGAGTACAACGG
TTAAACTGCATTTTGCCAAGGCCTCCGATGTGATGAAATCTTTAACAACTGGTAGTGGTTCTTTGCTTTCACCTAGCGGC
ACAATTACATTTGATGACCGAAGCAATGTATTACTGATTCAAGATGATGCACGCTCTGTCAAAAATATCAAAAAATTAAT
CGCAGAGTTGGATAAACCCATTGAGCAAATCGTTATTGAAGCACGTATTGTGACGATTACCGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGCATTTTTAATCCTACTGAGGCAGCCCATCGAGTTAGTGGTAGTCTAGATGCTAATGGCTTTAGT
AATATCAGTAATAATTTAAATGTAAATTTTGCGACAACGGTCACGCCGGCCGGCTCATTAGCTCTTCAAGTAGCCAAAAT
TAATGGTCGATTGTTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGCTTAC
TCACGACCAACAAGAAAAGTGCAAGCATCAAACAAGGGACAGAAATTCCTTATGTGGTGACAAATGGGAAAAATGACACT
CAATCAGTGGAATTTCGAGAAGCGGTGTTGGGATTAGAAGTCACACCGCATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTCAGTCAAAATTCCCCGGGAAATCGTGTGGCTTACGGGCAAAATGAAGTCGTATCCATTGATAAACAAGAAA
TCAATACACAAGTTTTTGCCAAAGATGGGGAAACGATTGTATTGGGTGGTGTATTCCACGATACGATCACGAAAGGAGTC
GATAAAGTACCATTATTGGGCGATATTCCAGGTATTAAGCACTTATTTAGTAAGAAAAGTGAACGTCATCAAAAACGAGA
ACTCGTCATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCCAAAAAGGAAAAGCATTTTAAGC
AAGTGGAAAAAGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (133-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.274	97.609	0.715
comE	Haemophilus influenzae 86-028NP	72.383	97.609	0.707
comE	Glaesserella parasuis strain SC1401	53.538	92.174	0.493
pilQ	Vibrio campbellii strain DS40M4	41.898	93.913	0.393
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.981	92.174	0.387
pilQ	Vibrio cholerae strain A1552	41.981	92.174	0.387