Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INQ00_RS03775 Genome accession   NZ_CP063110
Coordinates   760874..762403 (-) Length   509 a.a.
NCBI ID   WP_070776023.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 755874..767403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS03745 (INQ00_03750) - 756604..757116 (+) 513 WP_054420356.1 hypothetical protein -
  INQ00_RS03750 (INQ00_03755) - 757113..757655 (+) 543 WP_054420357.1 hypothetical protein -
  INQ00_RS03755 (INQ00_03760) - 757655..758038 (+) 384 WP_197547335.1 pilus assembly protein PilP -
  INQ00_RS03760 (INQ00_03765) comE 758040..759422 (+) 1383 WP_197547336.1 type IV pilus secretin PilQ Machinery gene
  INQ00_RS03765 (INQ00_03770) - 759443..760132 (+) 690 WP_197547337.1 ComF family protein -
  INQ00_RS03770 (INQ00_03775) nfuA 760246..760830 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -
  INQ00_RS03775 (INQ00_03780) comM 760874..762403 (-) 1530 WP_070776023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INQ00_RS03780 (INQ00_03785) yihA 762533..763147 (-) 615 WP_197547338.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INQ00_RS03785 (INQ00_03790) - 763261..764130 (+) 870 WP_197547339.1 VirK/YbjX family protein -
  INQ00_RS03790 (INQ00_03795) oppF 764170..765168 (-) 999 WP_197547340.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  INQ00_RS03795 (INQ00_03800) - 765165..766136 (-) 972 WP_197547341.1 ABC transporter ATP-binding protein -
  INQ00_RS03800 (INQ00_03805) oppC 766146..767081 (-) 936 WP_197547342.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55753.23 Da        Isoelectric Point: 9.7439

>NTDB_id=492891 INQ00_RS03775 WP_070776023.1 760874..762403(-) (comM) [Haemophilus parainfluenzae strain M1C160_1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESAVGFSAKNHLDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQTHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=492891 INQ00_RS03775 WP_070776023.1 760874..762403(-) (comM) [Haemophilus parainfluenzae strain M1C160_1]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGCGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGCATCACCGTCAACCTTGCACCGGCCGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCTATTGCAATCGGTATTTTAGCTGCATCAGATCAACTCGACGGTAGCCGTTTAAAACAGTTTGAATTCGT
TGGCGAGCTCGCATTAACGGGTGAATTACGTGGCGTACACGGCGTGATTCCCGCCATTTTAGCTGCACAAAAAGCGAAAC
GCGCCCCCATTATCGCTTATCAAAATGCCAATGAGGCCTCGCTTGTTTCAGAACAAGAGACTTATTTTGCTAAAAACCTT
TTGGAAGTCGTACAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTACTCGCACAAGAAAGTGCGGTCGGATT
TTCAGCTAAAAATCATTTAGATTTGACCGATATTATTGGTCAGCAACACGCTAAACGAGCACTAATGATAGCTGCCGCAG
GCCAACACAACCTGCTCTTTTTAGGGCCACCTGGGACAGGTAAAACCATGTTAGCAAGTCGTCTCACTGCATTGCTCCCT
GAAATGACGGATTTAGAAGCGATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCGCCACATCATAGTGCCTCATTACCTGCCTTAGTAGGAGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTGCTTGATGCGCTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCGAAAATCCAGTTCCCCGCTCGCTTTCAACTCGTTGC
CGCGATGAATCCAAGTCCAACGGGTCATTATACTGGAACACATAACCGAACCTCACCACAACAAGTGATGCGTTATTTAA
ACCGACTTTCGGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTCCCTCTTCTGCCACAAGGTAGCTTACAGAAT
ACAGGAGATAGAGGCGAGACAAGCCAGCAAGTACGAGAAAAAGTGTTGAAAGTGAGGGAAATTCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGGGACTGTAAATTACAAGATAAAGATGCATTATTCCTTGAGA
ATGCACTCAATAAGCTAGGACTTTCAGTAAGAGCCTATCATCGGATTTTAAAAGTCTCACGCACGATTGCTGATTTAAAT
GGCGAAAAAGAGATACAACAAACTCATTTAGCAGAAGCGCTAGGATATCGAGCGATGGATCGGTTGTTACAGAAATTGTC
TGCGGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.11

99.607

0.917
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

66.929

99.804

0.668
  comM Vibrio campbellii strain DS40M4

66.208

100

0.662
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.287

100

0.479