Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHV77_RS06060 Genome accession   NZ_CP063056
Coordinates   1257030..1258559 (+) Length   509 a.a.
NCBI ID   WP_194811120.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1252030..1263559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS06035 (IHV77_06035) rpsG 1252432..1252902 (-) 471 WP_194811116.1 30S ribosomal protein S7 -
  IHV77_RS06040 (IHV77_06040) rpsL 1253059..1253433 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  IHV77_RS06045 (IHV77_06045) - 1253692..1255080 (+) 1389 WP_408635293.1 chloride channel protein -
  IHV77_RS06050 (IHV77_06050) dusA 1255083..1256069 (+) 987 WP_194811118.1 tRNA dihydrouridine(20/20a) synthase DusA -
  IHV77_RS06055 (IHV77_06055) yihA 1256220..1256837 (+) 618 WP_194811119.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  IHV77_RS06060 (IHV77_06060) comM 1257030..1258559 (+) 1530 WP_194811120.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHV77_RS06065 (IHV77_06065) nfuA 1258617..1259201 (-) 585 WP_194811121.1 Fe-S biogenesis protein NfuA -
  IHV77_RS06070 (IHV77_06070) - 1259302..1260030 (-) 729 WP_194811122.1 ComF family protein -
  IHV77_RS06075 (IHV77_06075) comE 1260081..1261469 (-) 1389 WP_194811123.1 type IV pilus secretin PilQ Machinery gene
  IHV77_RS06080 (IHV77_06080) - 1261478..1261864 (-) 387 WP_194811124.1 hypothetical protein -
  IHV77_RS06085 (IHV77_06085) - 1261867..1262385 (-) 519 WP_194811125.1 hypothetical protein -
  IHV77_RS06090 (IHV77_06090) - 1262382..1262897 (-) 516 WP_194811126.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55906.43 Da        Isoelectric Point: 9.7412

>NTDB_id=492597 IHV77_RS06060 WP_194811120.1 1257030..1258559(+) (comM) [Rodentibacter haemolyticus strain DSM 111151]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGYLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSEQNTYFAQTL
LDVVQFLNNQEKLPLASELTDESAVNFPHKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLACRLTALLP
EMTDQEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGSLQH
SGERGETSAQVREKVLKVREIQLARAGKINAYLTGKEIERDCKLNEKEALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKQITQAHLAEALGYRAMDRLLQKLGNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=492597 IHV77_RS06060 WP_194811120.1 1257030..1258559(+) (comM) [Rodentibacter haemolyticus strain DSM 111151]
ATGTCTCTTGCCATTGTTTACAGCCGCGCCTCTATGGGGGTTCAAGCCCCTCTTGTGACCATTGAAGTTCATTTAAGTAA
TGGCAAACCGGGCTTTACCCTTGTCGGATTGCCGGAAAAAACTGTAAAAGAAGCTCAAGATCGTGTCCGTAGCGCATTGA
TGAATGCACAATTCAAATACCCTGCAAAACGCATTACCGTCAATCTTGCACCGGCAGATTTACCAAAAGAAGGCGGGCGT
TTTGATCTTCCCATTGCCATCGGCATTCTTGCGGCATCGGATCAACTTGACGGCTCCCGTTTAAAGCAGTTTGAGTTTGT
CGGTGAACTCGCATTAACCGGCTATTTACGTGGCGTACACGGTGTTATTCCTGCCATTCTCGCAGCACAAAAATCCAAAC
GAGAGCTCATCATCGCAAAACAAAATGCCAATGAAGCCTCTTTGGTTTCCGAACAAAACACCTATTTTGCGCAAACACTT
TTAGATGTGGTGCAATTTCTTAATAATCAGGAAAAATTACCCCTTGCTTCAGAACTGACGGACGAAAGTGCGGTCAATTT
TCCCCATAAAAATCCGTTGGATTTAACGGATATTATCGGGCAACAACATGCGAAACGCGCTCTCACAATTGCGGCGGCAG
GACAACACAATTTATTGTTTCTCGGCCCACCGGGAACCGGTAAAACAATGCTTGCCTGTCGATTAACCGCACTTTTGCCC
GAAATGACCGATCAAGAAGCGATTGAAACGGCTTCCGTTACAAGCCTTGTACAAAATGAACTGAATTTTCACAACTGGAA
ACAACGTCCATTTCGCGCACCACACCATAGTGCCTCTTTGCCGGCATTAGTGGGTGGAGGCACGATTCCTAAGCCGGGAG
AAATTTCCTTAGCACACAACGGCGTACTTTTTTTAGACGAATTGCCGGAATTTGAACGCAAAGTGCTTGATGCCCTAAGG
CAACCACTGGAAAGTGGCGAAATTATTATTTCGCGAGCAAATGCCAAGATTCAATTTCCGGCGCGTTTTCAATTAGTTGC
GGCAATGAACCCAAGCCCTACAGGACATTACACCGGCACGCATAATCGAACCTCACCACAGCAAGTTATGCGGTATTTAA
ATCGTCTTTCAGGGCCGTTTCTAGATCGTTTCGATTTATCCATTGAAGTTCCTCTATTGCCGAAAGGCAGTCTACAACAT
AGCGGCGAACGTGGGGAAACCAGTGCTCAAGTGCGAGAAAAGGTATTAAAAGTACGAGAAATTCAGTTGGCAAGAGCCGG
AAAAATCAACGCTTACTTAACCGGCAAAGAAATTGAACGTGATTGTAAACTGAACGAAAAAGAAGCCCTTTTTTTAGAAA
ACGCACTGAATAAACTAGGGCTTTCCGTTCGAGCCTACCACCGAATTTTAAAAGTCTCACGAACGATCGCCGATCTCAAC
GGCGAAAAACAAATTACTCAAGCACATTTGGCGGAAGCATTAGGATATCGGGCGATGGATAGATTATTACAAAAACTGGG
GAATATGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.731

100

0.927
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

66.206

99.411

0.658
  comM Vibrio campbellii strain DS40M4

65.558

100

0.658
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.674

100

0.483