Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IHV77_RS06075 Genome accession   NZ_CP063056
Coordinates   1260081..1261469 (-) Length   462 a.a.
NCBI ID   WP_194811123.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1255081..1266469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS06050 (IHV77_06050) dusA 1255083..1256069 (+) 987 WP_194811118.1 tRNA dihydrouridine(20/20a) synthase DusA -
  IHV77_RS06055 (IHV77_06055) yihA 1256220..1256837 (+) 618 WP_194811119.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  IHV77_RS06060 (IHV77_06060) comM 1257030..1258559 (+) 1530 WP_194811120.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHV77_RS06065 (IHV77_06065) nfuA 1258617..1259201 (-) 585 WP_194811121.1 Fe-S biogenesis protein NfuA -
  IHV77_RS06070 (IHV77_06070) - 1259302..1260030 (-) 729 WP_194811122.1 ComF family protein -
  IHV77_RS06075 (IHV77_06075) comE 1260081..1261469 (-) 1389 WP_194811123.1 type IV pilus secretin PilQ Machinery gene
  IHV77_RS06080 (IHV77_06080) - 1261478..1261864 (-) 387 WP_194811124.1 hypothetical protein -
  IHV77_RS06085 (IHV77_06085) - 1261867..1262385 (-) 519 WP_194811125.1 hypothetical protein -
  IHV77_RS06090 (IHV77_06090) - 1262382..1262897 (-) 516 WP_194811126.1 PilN domain-containing protein -
  IHV77_RS06095 (IHV77_06095) - 1262910..1263716 (-) 807 WP_194811127.1 competence protein ComA -
  IHV77_RS06100 (IHV77_06100) - 1263815..1266427 (+) 2613 WP_194811128.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50736.17 Da        Isoelectric Point: 7.7389

>NTDB_id=492599 IHV77_RS06075 WP_194811123.1 1260081..1261469(-) (comE) [Rodentibacter haemolyticus strain DSM 111151]
MKSGFKKCGLFFLCFCCAFSSTAEFKENQVFSIRLKQAPMVSSLQELALVQGTNLVIDDEIEGSLSLQLDNVDLDRVLRS
VAKMKGLSLRVEDDIYYLRKRSTGETLATAYVETSQAVVNEAFKGMKPSEPTLISRTVKLHFAKASEVMKSLTTGSGSLL
SAQGSIAFDDRSNVLIIQDEAKSVKNMLKLIAELDKPIEQIAIEARIVTISDESLKELGVRWGIFTPTENAHSVSGSLAA
NGFANLTDNLNVNFATNSTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTSG
KNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGRRVSYGQQNNEVVSIDKQEINTQVFAKDGETIVLGGVFHD
TITKAVDKVPVLGDIPLVKRLFSKESERHQKRELVIFVTPYILKQGETLESLKQKTKSGKRK

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=492599 IHV77_RS06075 WP_194811123.1 1260081..1261469(-) (comE) [Rodentibacter haemolyticus strain DSM 111151]
ATGAAAAGCGGGTTTAAAAAGTGCGGTTTATTTTTTCTGTGTTTTTGTTGTGCTTTTTCGTCAACGGCGGAATTTAAGGA
AAACCAAGTCTTTTCCATTCGATTAAAACAAGCCCCGATGGTCTCGAGTTTGCAAGAGTTAGCCTTAGTGCAAGGAACAA
ATTTGGTTATTGATGACGAAATCGAGGGGTCGCTTTCCTTGCAATTAGACAATGTGGATCTTGATCGCGTACTGCGTTCG
GTGGCAAAAATGAAAGGGCTGTCGTTACGTGTGGAAGATGATATTTATTATTTGAGAAAACGAAGTACGGGGGAAACTTT
GGCGACTGCCTATGTAGAAACATCACAAGCGGTCGTTAATGAGGCTTTTAAAGGAATGAAACCGAGCGAACCTACGTTAA
TCAGCCGTACCGTCAAATTACATTTCGCCAAAGCTTCGGAGGTGATGAAGTCCCTTACAACGGGAAGCGGGTCGCTTTTA
TCTGCGCAAGGGAGCATTGCTTTTGATGATCGCAGCAATGTGTTGATTATTCAAGATGAAGCAAAATCCGTTAAAAATAT
GCTGAAACTTATTGCAGAGTTAGATAAACCGATTGAGCAAATCGCTATTGAAGCACGTATTGTTACGATTAGCGATGAAA
GTTTAAAAGAATTAGGCGTACGTTGGGGGATTTTCACTCCCACGGAAAACGCACATTCGGTGAGCGGGAGTTTAGCGGCA
AATGGTTTTGCCAATTTAACGGATAATCTCAATGTGAATTTTGCTACCAATTCCACTCCGGCAGGTTCTCTTGCTTTGCA
AGTGGCAAAGATTAACGGACGATTATTAGATTTGGAATTGACCGCACTTGAGCGTGAAAATAATGTAGAAATTATCGCCA
GTCCAAGGTTACTGACGACCAACAAGAAAAGTGCAAGTATTAAACAGGGAACGGAAATTCCTTATGTGGTGACAAGCGGT
AAAAATGATACGCAATCGGTGGAATTTCGTGAGGCCGTACTGGGGCTTGAGGTAACGCCGCATATTTCCAAAGATAACAA
TATCTTATTAGATTTATTGGTTAGCCAAAATTCACCGGGTAGGCGCGTATCTTACGGGCAACAAAACAATGAAGTGGTGT
CTATCGACAAACAGGAAATCAACACGCAAGTTTTTGCGAAAGACGGAGAAACCATTGTGTTAGGCGGTGTATTTCACGAT
ACCATCACCAAAGCGGTGGATAAAGTGCCGGTGCTGGGGGATATTCCGTTGGTAAAACGATTGTTTAGCAAAGAAAGTGA
ACGACATCAAAAACGTGAGCTAGTCATTTTCGTCACACCATATATTCTAAAGCAAGGCGAAACCCTAGAAAGCTTGAAGC
AAAAAACAAAAAGCGGGAAGAGAAAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(282-444)

Bacterial type II/III secretion system short domain (Secretin_N)

(136-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

71.367

99.784

0.712
  comE Haemophilus influenzae 86-028NP

70.779

100

0.708
  comE Glaesserella parasuis strain SC1401

53.708

96.32

0.517
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.13

93.506

0.394
  pilQ Vibrio cholerae strain A1552

42.13

93.506

0.394
  pilQ Vibrio campbellii strain DS40M4

41.458

95.022

0.394