Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHV77_RS01745 Genome accession   NZ_CP063056
Coordinates   341470..341904 (-) Length   144 a.a.
NCBI ID   WP_194812452.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336470..346904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS01720 (IHV77_01720) - 338212..339207 (+) 996 WP_194812447.1 hypothetical protein -
  IHV77_RS01725 (IHV77_01725) - 339176..339589 (-) 414 WP_194812448.1 hypothetical protein -
  IHV77_RS01730 (IHV77_01730) - 339935..340411 (-) 477 WP_194812449.1 hypothetical protein -
  IHV77_RS01735 (IHV77_01735) - 340506..341144 (+) 639 WP_194812450.1 plasmid fertility inhibition factor family protein -
  IHV77_RS01740 (IHV77_01740) - 341104..341403 (-) 300 WP_194812451.1 hypothetical protein -
  IHV77_RS01745 (IHV77_01745) ssb 341470..341904 (-) 435 WP_194812452.1 single-stranded DNA-binding protein Machinery gene
  IHV77_RS01750 (IHV77_01750) - 342270..342464 (+) 195 WP_194812453.1 hypothetical protein -
  IHV77_RS01755 (IHV77_01755) - 342468..342683 (-) 216 WP_194812454.1 hypothetical protein -
  IHV77_RS01760 (IHV77_01760) - 342683..343069 (-) 387 WP_194812455.1 hypothetical protein -
  IHV77_RS01765 (IHV77_01765) - 343213..343740 (-) 528 WP_194812456.1 hypothetical protein -
  IHV77_RS01770 (IHV77_01770) - 343969..344466 (-) 498 WP_194812457.1 DUF3158 family protein -
  IHV77_RS01775 (IHV77_01775) - 344476..345222 (-) 747 WP_194812458.1 PFL_4669 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16293.07 Da        Isoelectric Point: 5.2303

>NTDB_id=492591 IHV77_RS01745 WP_194812452.1 341470..341904(-) (ssb) [Rodentibacter haemolyticus strain DSM 111151]
MAGINKVIIVGFLGNDPEIRTMPNGDAVANISVATSEAWTDKTTGERREITEWHRIVFYRRQAEICGEYLKKGSQVYVEG
RLRTRKWQDQNGQDHYTTEIQGDVLQMLGSRNQNTQQSAHNPSNGKPTPVNEPPMDGFDDDIPF

Nucleotide


Download         Length: 435 bp        

>NTDB_id=492591 IHV77_RS01745 WP_194812452.1 341470..341904(-) (ssb) [Rodentibacter haemolyticus strain DSM 111151]
ATGGCAGGTATAAACAAAGTAATTATTGTCGGATTTTTAGGTAATGACCCTGAAATTCGCACAATGCCAAATGGGGATGC
TGTTGCTAATATCAGTGTGGCAACATCGGAAGCTTGGACAGATAAAACAACCGGAGAACGCCGAGAAATAACCGAATGGC
ACCGTATTGTTTTTTATCGTCGCCAAGCCGAAATCTGTGGTGAATATTTGAAGAAAGGCTCCCAAGTGTATGTTGAGGGG
CGTTTACGCACTCGTAAATGGCAAGACCAAAATGGTCAAGATCATTATACAACAGAAATTCAAGGCGATGTATTGCAGAT
GTTGGGCAGTCGAAATCAAAATACACAGCAATCTGCTCATAATCCTAGTAATGGTAAACCAACTCCGGTGAATGAACCTC
CAATGGATGGATTTGATGATGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.667

100

0.771
  ssb Vibrio cholerae strain A1552

52.299

100

0.632
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.514
  ssb Neisseria meningitidis MC58

42.197

100

0.507
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.908

100

0.41
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.382