Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IL989_RS11595 Genome accession   NZ_CP062984
Coordinates   2384517..2384825 (-) Length   102 a.a.
NCBI ID   WP_081301877.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2379517..2389825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS11545 (IL989_11545) sinR 2379680..2380015 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  IL989_RS11550 (IL989_11550) tasA 2380063..2380848 (-) 786 WP_193350428.1 biofilm matrix protein TasA -
  IL989_RS11555 (IL989_11555) sipW 2380913..2381497 (-) 585 WP_071348018.1 signal peptidase I SipW -
  IL989_RS11560 (IL989_11560) tapA 2381469..2382140 (-) 672 WP_193350429.1 amyloid fiber anchoring/assembly protein TapA -
  IL989_RS11565 (IL989_11565) - 2382398..2382727 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  IL989_RS11570 (IL989_11570) - 2382768..2382947 (-) 180 WP_016938971.1 YqzE family protein -
  IL989_RS11575 (IL989_11575) comGG 2383004..2383381 (-) 378 WP_193350430.1 competence type IV pilus minor pilin ComGG Machinery gene
  IL989_RS11580 (IL989_11580) comGF 2383383..2383883 (-) 501 WP_227014200.1 competence type IV pilus minor pilin ComGF -
  IL989_RS11585 (IL989_11585) comGE 2383792..2384106 (-) 315 WP_193350431.1 competence type IV pilus minor pilin ComGE Machinery gene
  IL989_RS11590 (IL989_11590) comGD 2384090..2384527 (-) 438 WP_065522768.1 competence type IV pilus minor pilin ComGD Machinery gene
  IL989_RS11595 (IL989_11595) comGC 2384517..2384825 (-) 309 WP_081301877.1 competence type IV pilus major pilin ComGC Machinery gene
  IL989_RS11600 (IL989_11600) comGB 2384830..2385867 (-) 1038 WP_013352871.1 competence type IV pilus assembly protein ComGB Machinery gene
  IL989_RS11605 (IL989_11605) comGA 2385854..2386924 (-) 1071 WP_193350432.1 competence type IV pilus ATPase ComGA Machinery gene
  IL989_RS11610 (IL989_11610) - 2387118..2388068 (-) 951 WP_013352873.1 magnesium transporter CorA family protein -
  IL989_RS11615 (IL989_11615) - 2388215..2389516 (+) 1302 WP_193350433.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11422.38 Da        Isoelectric Point: 6.7076

>NTDB_id=492257 IL989_RS11595 WP_081301877.1 2384517..2384825(-) (comGC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILIKGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=492257 IL989_RS11595 WP_081301877.1 2384517..2384825(-) (comGC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACGATTCCTAACGTTACAAAACATAATCAAAGCATCCAGCATAAAGGCTGTGAAGGACTTCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGAAAAATGCCGGATATGAACGACTTACAATCAGAGGGATATATCAAA
AAGAATACAGCCTGCCCGAATGGAAAACAGATTTTAATAAAGGGCGGGGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

41.667

94.118

0.392
  comGC Staphylococcus aureus N315

41.667

94.118

0.392