NTDB

Overview

Name	comGD	Type	Machinery gene
Locus tag	IL989_RS11590	Genome accession	NZ_CP062984
Coordinates	2384090..2384527 (-)	Length	145 a.a.
NCBI ID	WP_065522768.1	Uniprot ID	A0AAP7TAM6
Organism	Bacillus amyloliquefaciens strain PP19 isolate PP19
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2379090..2389527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS11540 (IL989_11540)	sinI	2379473..2379646 (+)	174	WP_013352860.1	anti-repressor SinI	Regulator
IL989_RS11545 (IL989_11545)	sinR	2379680..2380015 (+)	336	WP_014470659.1	transcriptional regulator SinR	Regulator
IL989_RS11550 (IL989_11550)	tasA	2380063..2380848 (-)	786	WP_193350428.1	biofilm matrix protein TasA	-
IL989_RS11555 (IL989_11555)	sipW	2380913..2381497 (-)	585	WP_071348018.1	signal peptidase I SipW	-
IL989_RS11560 (IL989_11560)	tapA	2381469..2382140 (-)	672	WP_193350429.1	amyloid fiber anchoring/assembly protein TapA	-
IL989_RS11565 (IL989_11565)	-	2382398..2382727 (+)	330	WP_045510605.1	DUF3889 domain-containing protein	-
IL989_RS11570 (IL989_11570)	-	2382768..2382947 (-)	180	WP_016938971.1	YqzE family protein	-
IL989_RS11575 (IL989_11575)	comGG	2383004..2383381 (-)	378	WP_193350430.1	competence type IV pilus minor pilin ComGG	Machinery gene
IL989_RS11580 (IL989_11580)	comGF	2383383..2383883 (-)	501	WP_227014200.1	competence type IV pilus minor pilin ComGF	-
IL989_RS11585 (IL989_11585)	comGE	2383792..2384106 (-)	315	WP_193350431.1	competence type IV pilus minor pilin ComGE	Machinery gene
IL989_RS11590 (IL989_11590)	comGD	2384090..2384527 (-)	438	WP_065522768.1	competence type IV pilus minor pilin ComGD	Machinery gene
IL989_RS11595 (IL989_11595)	comGC	2384517..2384825 (-)	309	WP_081301877.1	competence type IV pilus major pilin ComGC	Machinery gene
IL989_RS11600 (IL989_11600)	comGB	2384830..2385867 (-)	1038	WP_013352871.1	competence type IV pilus assembly protein ComGB	Machinery gene
IL989_RS11605 (IL989_11605)	comGA	2385854..2386924 (-)	1071	WP_193350432.1	competence type IV pilus ATPase ComGA	Machinery gene
IL989_RS11610 (IL989_11610)	-	2387118..2388068 (-)	951	WP_013352873.1	magnesium transporter CorA family protein	-
IL989_RS11615 (IL989_11615)	-	2388215..2389516 (+)	1302	WP_193350433.1	hemolysin family protein	-

Sequence

Protein

Download Length: 145 a.a. Molecular weight: 16243.63 Da Isoelectric Point: 9.7141

                                >NTDB_id=492256 IL989_RS11590 WP_065522768.1 2384090..2384527(-) (comGD) [Bacillus amyloliquefaciens strain PP19 isolate PP19]

MNNNRLTENGFTLLESLVVLSLASVLLTVLFTAVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK

LQSAGRNVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAERK

Nucleotide

Download Length: 438 bp

                                >NTDB_id=492256 IL989_RS11590 WP_065522768.1 2384090..2384527(-) (comGD) [Bacillus amyloliquefaciens strain PP19 isolate PP19]

TTGAACAATAACCGGCTGACAGAAAACGGATTCACCCTTCTTGAAAGCTTGGTTGTGTTAAGTCTGGCGTCCGTATTGCT

GACTGTTTTGTTCACGGCGGTTCCGCCGGTTTATACCCATCTGGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA

TCCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTCCCAAAAGAGCATAAATACAAA

CTGCAGTCAGCCGGAAGGAATGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA

ATTTAACGAAAAAGGCCATCCGAATTCCGGCGGAAAGATTCAATTAAAAAGCGCGGGATTCACTTATGAAATAACAGTTT

ACTTAGGGAGCGGAAATGTCCATGCAGAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.835	95.862	0.545

Detailed information NTG0492256