Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   IL989_RS11575 Genome accession   NZ_CP062984
Coordinates   2383004..2383381 (-) Length   125 a.a.
NCBI ID   WP_193350430.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378004..2388381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS11535 (IL989_11535) - 2378499..2379293 (+) 795 WP_065981875.1 YqhG family protein -
  IL989_RS11540 (IL989_11540) sinI 2379473..2379646 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  IL989_RS11545 (IL989_11545) sinR 2379680..2380015 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  IL989_RS11550 (IL989_11550) tasA 2380063..2380848 (-) 786 WP_193350428.1 biofilm matrix protein TasA -
  IL989_RS11555 (IL989_11555) sipW 2380913..2381497 (-) 585 WP_071348018.1 signal peptidase I SipW -
  IL989_RS11560 (IL989_11560) tapA 2381469..2382140 (-) 672 WP_193350429.1 amyloid fiber anchoring/assembly protein TapA -
  IL989_RS11565 (IL989_11565) - 2382398..2382727 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  IL989_RS11570 (IL989_11570) - 2382768..2382947 (-) 180 WP_016938971.1 YqzE family protein -
  IL989_RS11575 (IL989_11575) comGG 2383004..2383381 (-) 378 WP_193350430.1 competence type IV pilus minor pilin ComGG Machinery gene
  IL989_RS11580 (IL989_11580) comGF 2383383..2383883 (-) 501 WP_227014200.1 competence type IV pilus minor pilin ComGF -
  IL989_RS11585 (IL989_11585) comGE 2383792..2384106 (-) 315 WP_193350431.1 competence type IV pilus minor pilin ComGE Machinery gene
  IL989_RS11590 (IL989_11590) comGD 2384090..2384527 (-) 438 WP_065522768.1 competence type IV pilus minor pilin ComGD Machinery gene
  IL989_RS11595 (IL989_11595) comGC 2384517..2384825 (-) 309 WP_081301877.1 competence type IV pilus major pilin ComGC Machinery gene
  IL989_RS11600 (IL989_11600) comGB 2384830..2385867 (-) 1038 WP_013352871.1 competence type IV pilus assembly protein ComGB Machinery gene
  IL989_RS11605 (IL989_11605) comGA 2385854..2386924 (-) 1071 WP_193350432.1 competence type IV pilus ATPase ComGA Machinery gene
  IL989_RS11610 (IL989_11610) - 2387118..2388068 (-) 951 WP_013352873.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14182.24 Da        Isoelectric Point: 10.1729

>NTDB_id=492254 IL989_RS11575 WP_193350430.1 2383004..2383381(-) (comGG) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MYKSDGFIYPAVLFVSAAVLLVISYTSSDFITRKTFAKEAGEYWIGENLLQNGALLSSRHMIQGQKTQSGTQRFPYGTVS
FYIDGKDRRETVQVTIKAVTASGTRREAHLLFNHKKKQLIQWTEV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=492254 IL989_RS11575 WP_193350430.1 2383004..2383381(-) (comGG) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTACAAATCAGACGGGTTTATATATCCGGCGGTTCTGTTTGTTTCTGCCGCAGTTTTACTTGTCATCAGCTATACTTC
ATCTGATTTCATCACTCGAAAAACATTTGCAAAAGAGGCCGGGGAGTATTGGATCGGTGAGAACCTGCTTCAAAACGGCG
CACTGCTGTCAAGCCGTCATATGATACAGGGACAAAAGACTCAGTCGGGCACACAGCGTTTTCCGTACGGAACAGTCTCT
TTTTACATAGACGGGAAGGATCGCCGGGAAACGGTTCAAGTTACAATAAAGGCGGTAACAGCATCAGGGACGAGACGGGA
GGCTCACCTTTTATTCAATCATAAGAAGAAACAGCTGATTCAATGGACAGAAGTATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

50.806

99.2

0.504