Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IL989_RS00250 Genome accession   NZ_CP062984
Coordinates   45619..45909 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40619..50909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS00210 (IL989_00210) darA 40636..40965 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  IL989_RS00215 (IL989_00215) - 40978..41418 (+) 441 WP_045513461.1 YaaR family protein -
  IL989_RS00220 (IL989_00220) holB 41430..42419 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  IL989_RS00225 (IL989_00225) ricT 42422..43249 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  IL989_RS00230 (IL989_00230) yabA 43264..43623 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  IL989_RS00235 (IL989_00235) - 43684..44427 (+) 744 WP_193351184.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IL989_RS00240 (IL989_00240) - 44414..44713 (+) 300 WP_193351185.1 GIY-YIG nuclease family protein -
  IL989_RS00245 (IL989_00245) rsmI 44688..45569 (+) 882 WP_193351186.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IL989_RS00250 (IL989_00250) abrB 45619..45909 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  IL989_RS00255 (IL989_00255) metG 46392..48383 (+) 1992 WP_193351187.1 methionine--tRNA ligase -
  IL989_RS00260 (IL989_00260) - 48460..49227 (+) 768 WP_193351887.1 TatD family hydrolase -
  IL989_RS00265 (IL989_00265) - 49362..50681 (+) 1320 WP_193351188.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=492215 IL989_RS00250 WP_169510469.1 45619..45909(-) (abrB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=492215 IL989_RS00250 WP_169510469.1 45619..45909(-) (abrB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979