Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MSA_RS01895 Genome accession   NC_021486
Coordinates   325673..326314 (+) Length   213 a.a.
NCBI ID   WP_016480307.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 320673..331314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS01875 (MSA_3860) - 321116..321853 (+) 738 WP_016480304.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  MSA_RS01880 (MSA_3870) pknB 321853..323808 (+) 1956 WP_016480305.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  MSA_RS01885 (MSA_3880) liaF 323969..324664 (+) 696 WP_000714456.1 cell wall-active antibiotics response protein LiaF -
  MSA_RS01890 (MSA_3890) - 324661..325680 (+) 1020 WP_016480306.1 sensor histidine kinase -
  MSA_RS01895 (MSA_3900) vraR 325673..326314 (+) 642 WP_016480307.1 response regulator transcription factor Regulator
  MSA_RS01900 (MSA_3910) - 326356..327756 (+) 1401 WP_000339135.1 Cof-type HAD-IIB family hydrolase -
  MSA_RS01905 (MSA_3920) - 327758..328114 (+) 357 WP_016480308.1 S1 RNA-binding domain-containing protein -
  MSA_RS01910 (MSA_3930) - 328161..328937 (-) 777 WP_016480309.1 glycyl-radical enzyme activating protein -
  MSA_RS01915 (MSA_3940) - 329058..329813 (+) 756 WP_016480310.1 DeoR/GlpR family DNA-binding transcription regulator -
  MSA_RS01920 (MSA_3950) - 329932..330915 (+) 984 WP_000764456.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23656.40 Da        Isoelectric Point: 5.3622

>NTDB_id=49052 MSA_RS01895 WP_016480307.1 325673..326314(+) (vraR) [Streptococcus agalactiae ILRI005]
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAI
LVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHHKCPALHEGLTARERDILNLLA
KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=49052 MSA_RS01895 WP_016480307.1 325673..326314(+) (vraR) [Streptococcus agalactiae ILRI005]
ATGGATAAAATAAAAATTGTACTTGTTGATGACCATGAGATGGTTCGTCTCGGTTTAAAAAGTTTTTTAAACTTACAAGC
TGATGTTGAAGTAATAGGTGAAGCCTCAAATGGTTTAGAAGGCATAAAAAAAGCACTGGAGTTACGTCCAGACGTTGTTG
TTATGGATTTAGTAATGCCTGAAATGGACGGTGTAGAAGCAACCTTAGCATTGTTGAAGGATTGGCCAGAAGCTGCTATT
TTAGTCTTAACATCTTACTTGGACAATGAAAAAATTTACCCTGTTATTGAAGCAGGTGCCAAAGGCTATATGTTAAAGAC
CTCAAGTGCAGCAGAGATTCTTAATGCCATTCGTAAAGTTGCAAGGGGAGAACAAGCTATTGAAAATGAAGTAGATAAGA
AAATTAAGGCTCATCATAAATGTCCAGCTTTACATGAGGGCTTAACAGCAAGGGAACGTGATATCCTTAATTTATTAGCC
AAAGGTTATGACAATCAAAGGATTGCTGATGAATTATTTATCTCGTTAAAGACTGTTAAAACTCATGTTTCTAATATTTT
GGGAAAACTAAATGTGGCAGATCGAACTCAAGCGGTTGTCTATGCTTTCCAACACCATTTGGTACCACAAGATGATGAAT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

54.369

96.714

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

37.168

100

0.394

Multiple sequence alignment