Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   MSA_RS00410 Genome accession   NC_021486
Coordinates   65210..66208 (+) Length   332 a.a.
NCBI ID   WP_016480179.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60210..71208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS00390 (MSA_850) - 60839..61096 (+) 258 WP_016480175.1 hypothetical protein -
  MSA_RS00395 (MSA_860) - 61517..62566 (+) 1050 WP_016480176.1 DUF6287 domain-containing protein -
  MSA_RS00400 (MSA_870) purB 62652..63950 (+) 1299 WP_016480177.1 adenylosuccinate lyase -
  MSA_RS00405 (MSA_880) comR 64103..65011 (+) 909 WP_016480178.1 XRE family transcriptional regulator Regulator
  MSA_RS00410 (MSA_890) ruvB 65210..66208 (+) 999 WP_016480179.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MSA_RS00415 (MSA_900) - 66360..66797 (+) 438 WP_016480180.1 low molecular weight protein-tyrosine-phosphatase -
  MSA_RS00420 (MSA_910) - 66804..67184 (+) 381 WP_000787702.1 membrane protein -
  MSA_RS00425 (MSA_920) - 67181..68959 (+) 1779 WP_016480181.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37501.83 Da        Isoelectric Point: 4.5356

>NTDB_id=49032 MSA_RS00410 WP_016480179.1 65210..66208(+) (ruvB) [Streptococcus agalactiae ILRI005]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEGNDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=49032 MSA_RS00410 WP_016480179.1 65210..66208(+) (ruvB) [Streptococcus agalactiae ILRI005]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGATTTCTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATCTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGGAAATGATTTGAC
AGAAATTATTGAGCGTACAGCAGACATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATACGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

90.06

100

0.901
  ruvB Streptococcus pneumoniae R6

89.759

100

0.898
  ruvB Streptococcus pneumoniae D39

89.759

100

0.898
  ruvB Bacillus subtilis subsp. subtilis str. 168

59.819

99.699

0.596
  ruvB Helicobacter pylori 26695

53.074

93.072

0.494
  ruvB Synechocystis sp. PCC 6803

50.479

94.277

0.476

Multiple sequence alignment