Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   SESEC_RS00695 Genome accession   NC_017582
Coordinates   122469..122903 (+) Length   144 a.a.
NCBI ID   WP_014622144.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117469..127903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS00665 (SeseC_00118) - 118779..119447 (+) 669 WP_014622139.1 ATP-binding cassette domain-containing protein -
  SESEC_RS00670 (SeseC_00119) comGA/cglA 119603..120541 (+) 939 WP_038674626.1 competence type IV pilus ATPase ComGA Machinery gene
  SESEC_RS00675 (SeseC_00120) comYB 120474..121508 (+) 1035 WP_228269618.1 competence type IV pilus assembly protein ComGB Machinery gene
  SESEC_RS00680 (SeseC_00121) comGC/cglC 121509..121832 (+) 324 WP_014622142.1 competence type IV pilus major pilin ComGC Machinery gene
  SESEC_RS00685 (SeseC_00122) comGD 121810..122235 (+) 426 WP_012678812.1 competence type IV pilus minor pilin ComGD -
  SESEC_RS00690 (SeseC_00123) comGE 122240..122482 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  SESEC_RS00695 (SeseC_00125) comYF 122469..122903 (+) 435 WP_014622144.1 competence type IV pilus minor pilin ComGF Machinery gene
  SESEC_RS10785 (SeseC_00126) comGG 122881..123060 (+) 180 WP_014622145.1 competence type IV pilus minor pilin ComGG -
  SESEC_RS00705 (SeseC_00127) comYH 123305..124258 (+) 954 WP_014622146.1 class I SAM-dependent methyltransferase Machinery gene
  SESEC_RS00710 (SeseC_00128) - 124318..125517 (+) 1200 WP_012678817.1 acetate kinase -
  SESEC_RS00715 (SeseC_00129) - 125882..126493 (-) 612 WP_014622147.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16185.72 Da        Isoelectric Point: 10.1988

>NTDB_id=49032 SESEC_RS00695 WP_014622144.1 122469..122903(+) (comYF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITTVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=49032 SESEC_RS00695 WP_014622144.1 122469..122903(+) (comYF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTATTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAACAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF Lactococcus lactis subsp. cremoris KW2

46.429

97.222

0.451

Multiple sequence alignment