Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SESEC_RS00675 Genome accession   NC_017582
Coordinates   120474..121508 (+) Length   344 a.a.
NCBI ID   WP_228269618.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115474..126508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS00660 (SeseC_00117) - 116774..118777 (+) 2004 WP_014622138.1 DUF1430 domain-containing protein -
  SESEC_RS00665 (SeseC_00118) - 118779..119447 (+) 669 WP_014622139.1 ATP-binding cassette domain-containing protein -
  SESEC_RS00670 (SeseC_00119) comGA/cglA 119603..120541 (+) 939 WP_038674626.1 competence type IV pilus ATPase ComGA Machinery gene
  SESEC_RS00675 (SeseC_00120) comYB 120474..121508 (+) 1035 WP_228269618.1 competence type IV pilus assembly protein ComGB Machinery gene
  SESEC_RS00680 (SeseC_00121) comGC/cglC 121509..121832 (+) 324 WP_014622142.1 competence type IV pilus major pilin ComGC Machinery gene
  SESEC_RS00685 (SeseC_00122) comGD 121810..122235 (+) 426 WP_012678812.1 competence type IV pilus minor pilin ComGD -
  SESEC_RS00690 (SeseC_00123) comGE 122240..122482 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  SESEC_RS00695 (SeseC_00125) comYF 122469..122903 (+) 435 WP_014622144.1 competence type IV pilus minor pilin ComGF Machinery gene
  SESEC_RS10785 (SeseC_00126) comGG 122881..123060 (+) 180 WP_014622145.1 competence type IV pilus minor pilin ComGG -
  SESEC_RS00705 (SeseC_00127) comYH 123305..124258 (+) 954 WP_014622146.1 class I SAM-dependent methyltransferase Machinery gene
  SESEC_RS00710 (SeseC_00128) - 124318..125517 (+) 1200 WP_012678817.1 acetate kinase -
  SESEC_RS00715 (SeseC_00129) - 125882..126493 (-) 612 WP_014622147.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39440.69 Da        Isoelectric Point: 9.3109

>NTDB_id=49030 SESEC_RS00675 WP_228269618.1 120474..121508(+) (comYB) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=49030 SESEC_RS00675 WP_228269618.1 120474..121508(+) (comYB) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAATGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTGGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAGTCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.982

98.547

0.532
  comYB Streptococcus mutans UA159

53.982

98.547

0.532
  comYB Streptococcus gordonii str. Challis substr. CH1

52.647

98.837

0.52
  comGB/cglB Streptococcus mitis SK321

49.55

96.802

0.48
  comGB/cglB Streptococcus mitis NCTC 12261

49.107

97.674

0.48
  comGB/cglB Streptococcus pneumoniae Rx1

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae D39

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae R6

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae TIGR4

48.949

96.802

0.474
  comGB Lactococcus lactis subsp. cremoris KW2

46.313

98.547

0.456

Multiple sequence alignment