Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MSA_RS00260 Genome accession   NC_021486
Coordinates   32597..33358 (+) Length   253 a.a.
NCBI ID   WP_001266273.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27597..38358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS00245 (MSA_510) - 28895..30232 (+) 1338 WP_016480148.1 CHAP domain-containing protein -
  MSA_RS00250 (MSA_520) - 30356..31324 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  MSA_RS00255 (MSA_530) - 31432..32607 (+) 1176 WP_016480149.1 pyridoxal phosphate-dependent aminotransferase -
  MSA_RS00260 (MSA_540) recO 32597..33358 (+) 762 WP_001266273.1 DNA repair protein RecO Machinery gene
  MSA_RS00265 (MSA_550) - 33420..34262 (+) 843 WP_016480150.1 CPBP family intramembrane glutamic endopeptidase -
  MSA_RS00270 (MSA_560) plsX 34340..35332 (+) 993 WP_000717416.1 phosphate acyltransferase PlsX -
  MSA_RS00275 (MSA_570) - 35343..35582 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  MSA_RS00280 (MSA_580) purC 35707..36411 (+) 705 WP_016480151.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29656.05 Da        Isoelectric Point: 6.2989

>NTDB_id=49030 MSA_RS00260 WP_001266273.1 32597..33358(+) (recO) [Streptococcus agalactiae ILRI005]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=49030 MSA_RS00260 WP_001266273.1 32597..33358(+) (recO) [Streptococcus agalactiae ILRI005]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625

Multiple sequence alignment