Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF725_RS13490 | Genome accession | NZ_CP062412 |
| Coordinates | 2739259..2739729 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain NAS_AN_181 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2722886..2746543 | 2739259..2739729 | within | 0 |
Gene organization within MGE regions
Location: 2722886..2746543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF725_RS13375 (IF725_13315) | - | 2722886..2723732 (+) | 847 | Protein_2599 | class I SAM-dependent methyltransferase | - |
| IF725_RS13380 (IF725_13320) | - | 2724104..2725327 (-) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| IF725_RS13385 (IF725_13325) | lukH | 2725763..2726815 (+) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| IF725_RS13390 (IF725_13330) | lukG | 2726837..2727853 (+) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| IF725_RS13395 (IF725_13335) | sph | 2728091..2728921 (-) | 831 | Protein_2603 | sphingomyelin phosphodiesterase | - |
| IF725_RS13400 (IF725_13340) | - | 2728972..2730009 (-) | 1038 | WP_240100856.1 | site-specific integrase | - |
| IF725_RS13405 (IF725_13345) | - | 2730182..2730721 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IF725_RS13410 (IF725_13350) | - | 2730861..2731028 (-) | 168 | WP_031806878.1 | hypothetical protein | - |
| IF725_RS13415 (IF725_13355) | - | 2731232..2731573 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF725_RS13420 (IF725_13360) | - | 2731579..2732511 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF725_RS13425 (IF725_13365) | - | 2732527..2733240 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF725_RS13430 (IF725_13370) | - | 2733203..2733376 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF725_RS13435 (IF725_13375) | - | 2733373..2733636 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF725_RS13440 (IF725_13380) | - | 2733652..2733849 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| IF725_RS13445 (IF725_13385) | - | 2733836..2734216 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF725_RS13450 (IF725_13390) | - | 2734271..2734594 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF725_RS13455 (IF725_13395) | - | 2734591..2734752 (+) | 162 | WP_000048132.1 | DUF1270 family protein | - |
| IF725_RS13460 (IF725_13400) | - | 2734847..2735149 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF725_RS13465 (IF725_13405) | - | 2735154..2735414 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF725_RS13470 (IF725_13410) | - | 2735423..2735686 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF725_RS13475 (IF725_13415) | - | 2735695..2737638 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| IF725_RS13480 (IF725_13420) | - | 2737640..2738560 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF725_RS13485 (IF725_13425) | - | 2738641..2739258 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| IF725_RS13490 (IF725_13430) | ssbA | 2739259..2739729 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| IF725_RS13495 (IF725_13435) | - | 2739759..2740652 (+) | 894 | WP_000148322.1 | DnaD domain-containing protein | - |
| IF725_RS13500 (IF725_13440) | - | 2740659..2740877 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF725_RS13505 (IF725_13445) | - | 2740886..2741290 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF725_RS13510 (IF725_13450) | - | 2741303..2741671 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF725_RS13515 (IF725_13455) | - | 2741675..2741917 (+) | 243 | WP_000131389.1 | SAV1978 family virulence-associated passenger protein | - |
| IF725_RS13520 (IF725_13460) | - | 2741982..2742431 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| IF725_RS13525 (IF725_13465) | - | 2742428..2742937 (+) | 510 | WP_001105599.1 | hypothetical protein | - |
| IF725_RS13530 (IF725_13470) | - | 2742934..2743344 (+) | 411 | WP_000197968.1 | hypothetical protein | - |
| IF725_RS13535 | - | 2743370..2743462 (+) | 93 | Protein_2631 | DUF1024 family protein | - |
| IF725_RS13540 (IF725_13480) | - | 2743818..2744354 (+) | 537 | WP_001066443.1 | dUTP diphosphatase | - |
| IF725_RS13545 (IF725_13485) | - | 2744391..2744636 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF725_RS13550 (IF725_13490) | - | 2744633..2744839 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF725_RS13555 (IF725_13495) | - | 2744836..2745222 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF725_RS13560 (IF725_13500) | - | 2745219..2745368 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF725_RS13565 (IF725_13505) | - | 2745368..2745568 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF725_RS13570 (IF725_13510) | - | 2745596..2746012 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF725_RS13575 (IF725_13515) | - | 2746244..2746543 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489763 IF725_RS13490 WP_000934760.1 2739259..2739729(+) (ssbA) [Staphylococcus aureus strain NAS_AN_181]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489763 IF725_RS13490 WP_000934760.1 2739259..2739729(+) (ssbA) [Staphylococcus aureus strain NAS_AN_181]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |