Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF735_RS14020 | Genome accession | NZ_CP062408 |
| Coordinates | 2818706..2819176 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain NAS_AN_247 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2796620..2824509 | 2818706..2819176 | within | 0 |
Gene organization within MGE regions
Location: 2796620..2824509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF735_RS13875 (IF735_13810) | groES | 2796620..2796904 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF735_RS13880 (IF735_13815) | groL | 2796980..2798596 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF735_RS13885 (IF735_13820) | - | 2799130..2800437 (-) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| IF735_RS13890 (IF735_13825) | - | 2800598..2801509 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| IF735_RS13895 (IF735_13830) | - | 2801571..2802417 (+) | 847 | Protein_2702 | class I SAM-dependent methyltransferase | - |
| IF735_RS13900 (IF735_13835) | - | 2802789..2804012 (-) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| IF735_RS13905 (IF735_13840) | lukH | 2804448..2805500 (+) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| IF735_RS13910 (IF735_13845) | lukG | 2805522..2806538 (+) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| IF735_RS13915 (IF735_13850) | sph | 2806776..2807606 (-) | 831 | Protein_2706 | sphingomyelin phosphodiesterase | - |
| IF735_RS13920 (IF735_13855) | - | 2807657..2808694 (-) | 1038 | WP_000857184.1 | site-specific integrase | - |
| IF735_RS13925 (IF735_13860) | - | 2808753..2809217 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| IF735_RS13930 (IF735_13865) | - | 2809317..2809499 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| IF735_RS13935 (IF735_13870) | - | 2809703..2810044 (-) | 342 | WP_031824606.1 | hypothetical protein | - |
| IF735_RS13940 (IF735_13875) | - | 2810050..2810982 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF735_RS13945 (IF735_13880) | - | 2810998..2811711 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF735_RS13950 (IF735_13885) | - | 2811674..2811847 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF735_RS13955 (IF735_13890) | - | 2811844..2812107 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF735_RS13960 (IF735_13895) | - | 2812123..2812338 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF735_RS13965 (IF735_13900) | - | 2812327..2812656 (-) | 330 | WP_000180411.1 | hypothetical protein | - |
| IF735_RS13970 (IF735_13905) | - | 2812707..2813450 (+) | 744 | WP_016170552.1 | phage antirepressor KilAC domain-containing protein | - |
| IF735_RS13975 | - | 2813475..2813573 (+) | 99 | Protein_2718 | hypothetical protein | - |
| IF735_RS13980 (IF735_13915) | - | 2813723..2814043 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| IF735_RS13985 (IF735_13920) | - | 2814040..2814201 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| IF735_RS13990 (IF735_13925) | - | 2814294..2814596 (+) | 303 | WP_016170555.1 | DUF2482 family protein | - |
| IF735_RS13995 (IF735_13930) | - | 2814601..2814861 (+) | 261 | WP_000291504.1 | DUF1108 family protein | - |
| IF735_RS14000 (IF735_13935) | - | 2814870..2815133 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF735_RS14005 (IF735_13940) | - | 2815142..2817085 (+) | 1944 | WP_025173834.1 | AAA family ATPase | - |
| IF735_RS14010 (IF735_13945) | - | 2817087..2818007 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF735_RS14015 (IF735_13950) | - | 2818088..2818705 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| IF735_RS14020 (IF735_13955) | ssbA | 2818706..2819176 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| IF735_RS14025 (IF735_13960) | - | 2819206..2820100 (+) | 895 | Protein_2728 | DnaD domain-containing protein | - |
| IF735_RS14030 (IF735_13965) | - | 2820107..2820325 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF735_RS14035 (IF735_13970) | - | 2820334..2820738 (+) | 405 | WP_000401974.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF735_RS14040 (IF735_13975) | - | 2820751..2821119 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF735_RS14045 (IF735_13980) | - | 2821123..2821365 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| IF735_RS14050 (IF735_13985) | - | 2821380..2821634 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| IF735_RS14055 (IF735_13990) | - | 2821621..2821791 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| IF735_RS14060 (IF735_13995) | - | 2821784..2822320 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| IF735_RS14065 (IF735_14000) | - | 2822357..2822602 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF735_RS14070 (IF735_14005) | - | 2822599..2822805 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF735_RS14075 (IF735_14010) | - | 2822802..2823188 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF735_RS14080 (IF735_14015) | - | 2823185..2823334 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF735_RS14085 (IF735_14020) | - | 2823334..2823534 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF735_RS14090 (IF735_14025) | - | 2823562..2823978 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF735_RS14095 (IF735_14030) | - | 2824210..2824509 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489593 IF735_RS14020 WP_000934760.1 2818706..2819176(+) (ssbA) [Staphylococcus aureus strain NAS_AN_247]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489593 IF735_RS14020 WP_000934760.1 2818706..2819176(+) (ssbA) [Staphylococcus aureus strain NAS_AN_247]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |