Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SGGB_RS02635 Genome accession   NC_017576
Coordinates   492863..493525 (+) Length   220 a.a.
NCBI ID   WP_013642742.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487863..498525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS02610 (SGGB_0472) - 487979..489379 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  SGGB_RS02615 (SGGB_0473) - 489379..489735 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  SGGB_RS02620 (SGGB_0474) cysK 489849..490778 (-) 930 WP_014619962.1 cysteine synthase A -
  SGGB_RS02625 (SGGB_0475) - 490882..491508 (-) 627 WP_013642740.1 YigZ family protein -
  SGGB_RS02630 (SGGB_0476) comFA/cflA 491565..492866 (+) 1302 WP_013642741.1 DEAD/DEAH box helicase Machinery gene
  SGGB_RS02635 (SGGB_0477) comFC/cflB 492863..493525 (+) 663 WP_013642742.1 ComF family protein Machinery gene
  SGGB_RS02640 (SGGB_0478) hpf 493601..494149 (+) 549 WP_013642743.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25648.64 Da        Isoelectric Point: 8.8643

>NTDB_id=48906 SGGB_RS02635 WP_013642742.1 492863..493525(+) (comFC/cflB) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLDCQKTFERIGDVHCQNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHIFSKELKQALKKYKNYTFVPVPISPKRLEERQFNQVTALLQAAKIPYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=48906 SGGB_RS02635 WP_013642742.1 492863..493525(+) (comFC/cflB) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGATTTGCCTACTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAAAAAGATGACAA
CGGCGTGTGTCTGGATTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCAAAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGGGATATCCTTTTAAGTCACATTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAGAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCCCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae TIGR4

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae Rx1

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae D39

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae R6

50.909

100

0.509
  comFC/cflB Streptococcus mitis SK321

50

100

0.5
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364

Multiple sequence alignment