Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LP6_RS12165 Genome accession   NC_021350
Coordinates   2692366..2692956 (+) Length   196 a.a.
NCBI ID   WP_015444136.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila str. Thunder Bay     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2687366..2697956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP6_RS12140 (LP6_2354) - 2688469..2689362 (+) 894 WP_010948033.1 lpg2327 family Dot/Icm T4SS effector -
  LP6_RS12145 (LP6_2355) lem22 2689626..2690009 (+) 384 WP_010948034.1 Dot/Icm T4SS effector Lem22 -
  LP6_RS12150 (LP6_2356) - 2690203..2690433 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LP6_RS12155 (LP6_2357) - 2690414..2691310 (+) 897 WP_015444138.1 polyprenyl synthetase family protein -
  LP6_RS12160 (LP6_2359) bioC 2691354..2692208 (-) 855 WP_015444137.1 malonyl-ACP O-methyltransferase BioC -
  LP6_RS12165 (LP6_2358) comFC 2692366..2692956 (+) 591 WP_015444136.1 ComF family protein Machinery gene
  LP6_RS12170 (LP6_2360) - 2692985..2694058 (-) 1074 WP_015444135.1 site-2 protease family protein -
  LP6_RS12175 (LP6_2361) - 2694115..2694393 (-) 279 WP_010948040.1 hypothetical protein -
  LP6_RS15735 (LP6_2362) - 2694432..2694587 (+) 156 WP_162096598.1 hypothetical protein -
  LP6_RS12180 (LP6_2363) hemA 2694711..2695985 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  LP6_RS12185 (LP6_2364) prfA 2695969..2697057 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  LP6_RS12190 (LP6_2365) prmC 2697050..2697913 (+) 864 WP_010948043.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22366.08 Da        Isoelectric Point: 9.4846

>NTDB_id=48905 LP6_RS12165 WP_015444136.1 2692366..2692956(+) (comFC) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNALKP
DCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVMIVD
DLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=48905 LP6_RS12165 WP_015444136.1 2692366..2692956(+) (comFC) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
ATGAAACAACTTGGATCTTGCTGTCAATACTGTGCCTACCCCCTTTCTGATGATACGTATCTGGTTTGTGGTCAATGCGT
TAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTTGAAGAACCTCTGCGTAGTTTAATACATCAGTTTA
AATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACTTCTTAATGCCTTACCCAAAAACGCATTGAAACCA
GATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAAGGGGATTTAACCAGGCTGGTGTATTAACCAGATT
ATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAAAAAATAATCAATACCGCTTCACAAGCCAACCTTG
ATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATCAGCTGTAACTTATGAACACGTTATGATTGTTGAT
GACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACATTAAAAAATGCTGGAGTTAAGAGAGTAGATATATG
TTGTTGTGCGCGGGCTGTAACTAAAAATTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(107-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

97.449

100

0.974
  comFC Legionella pneumophila str. Paris

97.449

100

0.974
  comF Haemophilus influenzae 86-028NP

36.598

98.98

0.362

Multiple sequence alignment