Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LP6_RS08000 Genome accession   NC_021350
Coordinates   1747093..1748103 (-) Length   336 a.a.
NCBI ID   WP_025862355.1    Uniprot ID   Q5ZV64
Organism   Legionella pneumophila subsp. pneumophila str. Thunder Bay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742093..1753103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP6_RS07970 (LP6_1549) - 1742432..1743265 (-) 834 WP_015444469.1 S1/P1 nuclease -
  LP6_RS07975 (LP6_1550) tolB 1743268..1744527 (-) 1260 WP_010947300.1 Tol-Pal system beta propeller repeat protein TolB -
  LP6_RS07980 (LP6_1551) tolA 1744533..1745531 (-) 999 WP_010947301.1 cell envelope integrity protein TolA -
  LP6_RS07985 (LP6_1552) tolR 1745528..1745983 (-) 456 WP_010947302.1 protein TolR -
  LP6_RS07990 (LP6_1553) tolQ 1745992..1746669 (-) 678 WP_011946571.1 protein TolQ -
  LP6_RS07995 (LP6_1554) ybgC 1746694..1747089 (-) 396 WP_010947304.1 tol-pal system-associated acyl-CoA thioesterase -
  LP6_RS08000 (LP6_1555) ruvB 1747093..1748103 (-) 1011 WP_025862355.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LP6_RS08005 (LP6_1556) - 1748250..1748813 (-) 564 WP_010947306.1 sigma-70 family RNA polymerase sigma factor -
  LP6_RS08010 - 1748907..1749356 (-) 450 WP_010947307.1 lpg1578 family Dot/Icm T4SS effector -
  LP6_RS08015 - 1749298..1749537 (-) 240 WP_011215498.1 succinate dehydrogenase assembly factor 2 -
  LP6_RS08020 (LP6_1557) - 1749663..1750652 (+) 990 WP_025862353.1 glycine cleavage system protein T -
  LP6_RS08025 (LP6_1558) - 1750683..1751231 (-) 549 WP_010947309.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37104.63 Da        Isoelectric Point: 5.2639

>NTDB_id=48883 LP6_RS08000 WP_025862355.1 1747093..1748103(-) (ruvB) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=48883 LP6_RS08000 WP_025862355.1 1747093..1748103(-) (ruvB) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTACGTAGGGCAAGATTCTGTTAGCTCACAGATGCAGATATTTATCAATGCGGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCACCTGGCCTTGGTAAAACTACCCTTGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCAGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGCGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCAGCAGCACGATCCATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACAAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCCAGATTGTGGCACGCTCCGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCTCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTGATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCAGCTGCTATTGGCGAAGAAA
AAGGGACTATAGAAGATGTTTTGGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZV64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.366

97.619

0.589
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.795

95.833

0.506
  ruvB Synechocystis sp. PCC 6803

53.871

92.262

0.497

Multiple sequence alignment